Table 2. Homology search results for the DNA fragments from selected DGGE bands.
Band | Highest match(es) | Accession number | Identity (%) |
a | Tetragenococcus muriaticus strain NBRC 100499 | NR113915.1 | 99 |
Tetragenococcus muriaticus strain LMG 18498 | NR116418.1 | 99 | |
Tetragenococcus muriaticus strain X-1 | NR025887.1 | 99 | |
b | Tetragenococcus muriaticus strain NBRC 100499 | NR113915.1 | 100 |
Tetragenococcus muriaticus strain LMG 18498 | NR116418.1 | 100 | |
Tetragenococcus muriaticus strain X-1 | NR025887.1 | 100 | |
c | Halanaerobium fermentans strain R-9 | NR024715.1 | 100 |
d | Clostridium haemolyticum strain JCM 1402 | NR113381.1 | 100 |
Clostridium haemolyticum strain DSM 5565 | NR117767.1 | 100 | |
Clostridium haemolyticum strain ATCC 9650 | NR024749.1 | 100 | |
Clostridium haemolyticum strain DSM 5565 | NR119281.1 | 100 | |
e* | Sphingomonas roseiflava strain MK341 | NR117716.1 | 100 |
f | Clostridium drakei strain FP | NR114863.1 | 100 |
Clostridium drakei strain SL1 | NR044942.1 | 100 | |
Clostridium carboxidivorans strain P7 | NR104768.1 | 100 | |
Clostridium vincentii strain DSM 10228 | NR026336.1 | 100 | |
Clostridium scatologenes strain ATCC 25775 | NR118727.1 | 100 | |
g | Tetragenococcus halophilus subsp. flandriensis strain T5 | NR108208.1 | 100 |
h | Lactobacillus acidipiscis strain NBRC 102163 | NR112693.1 | 99 |
Lactobacillus acidipiscis strain FS60-1 | NR024718.1 | 99 | |
i | Lactobacillus acidipiscis strain NBRC 102163 | NR112693.1 | 100 |
j | Lactobacillus rennini strain CECT 5922 | NR042195.1 | 99 |
k | Lactobacillus rennini strain CECT 5922 | NR042195.1 | 100 |
l | Lactobacillus rennini strain CECT 5922 | NR042195.1 | 99 |
m | Weissella paramesenteroides | NR044759.1 | 100 |
Weissella paramesenteroides | NR040815.1 | 100 | |
Weissella hellenica strain NBRC 15553 | NR113775.1 | 100 | |
Weissella hellenica strain NCFB 2973 | NR119224.1 | 100 | |
n | Pediococcus pentosaceus ATCC 25745 strain | NR075052.1 | 100 |
Pediococcus pentosaceus strain DSM 20336 | NR042058.1 | 100 | |
Pediococcus argentinicus strain CRL 776 | NR042623.1 | 100 | |
o | Lactobacillus futsaii strain YM 0097 | NR117973.1 | 100 |
Lactobacillus farciminis strain BCRC 14043 | NR114398.1 | 100 | |
Lactobacillus heilongjiangensis strain S4-3 | NR109370.1 | 100 | |
p | Lactobacillus rennini strain CECT 5922 | NR042195.1 | 99 |
q | Tetragenococcus halophilus strain JCM 5888 | NR115655.1 | 100 |
*Another 33 Sphingomonas, 15 Sphingobium, 9 Sphingopyxis, 2 Erythrobacter, 1 Altererythrobacter, 1 Novosphingobium and 1 Stakelama species were matched with 100% identity (data not shown).