Table 3.
Genes related to oxidative response found in Acinetobacter sp. Ver3.
| Oxidative response | NCBI accession | Function |
|---|---|---|
| Regulators | ||
| oxyR | EZQ10419 | H2O2 induced regulator |
| soxR | EZQ11770 | O2- induced regulator |
| soxS | Not found | |
| furR | EZQ09953 | Fe induced regulator |
| SODs | ||
| sodB | EZQ10255 | Cytoplasmic FeSOD |
| sodC | EZQ12222 | Periplasmic CuZnSOD |
| Catalases and peroxidases | ||
| kat | EZQ12194 | Cytoplasmic catalase |
| EZQ11977 | Periplasmic catalase | |
| ahpC1 (two paralogs) | EZQ07158 | Alkylhydroperoxidase C |
| EZQ01175 | Alkylhydroperoxidase C | |
| EZQ10124 | Thiol peroxidase BCP type | |
| EZQ03014 | Glutathione peroxidase | |
| EZQ12479 | Putative peroxidase | |
| EZQ04963 | Rubrerythrin | |
| ohr | EZQ02177 | Organic hydroperoxide resistance protein |
| EZQ10931 | Glutathione peroxidase | |
| Damage to non-DNA molecules | ||
| Lipids and membranes | EZQ03777 | Lysophospholipase |
| EZQ10901 | Lysophospholipase | |
| EZQ12493 | Lysophospholipase | |
| EZQ10434 | Glycerophosphoryl diester phosphodiesterase | |
| EZQ10435 | Glycerophosphoryl diester phosphodiesterase | |
| EZQ11565 | Glycerophosphoryl diester phosphodiesterase | |
| EZQ06623 | Lysophospholipase L1 and related esterases | |
| EZQ10413 | Lysophospholipase L1 and related esterases | |
| Proteins | EZQ10372 | Peptide methionine sulfoxide reductase |
| EZQ10932 | Conserved domain frequently associated with peptide methionine sulfoxide reductase |
Comparison with strains A. baumannii DSM 30007, A. johnsonii DSM 6963, and A. lwoffii DSM 2403 showed that highlighted genes are either unique in Ver3, or present in only one of the other strains.