Table 1. The versions of the public tools used in RNAMiner.
| Tool | Version |
|---|---|
| TopHat2 | 2.0.6 |
| Bowtie2 | 2.1.0 |
| Cufflinks | 2.2.1 |
| HTSeq | 0.5.3p7 |
| edgeR | 3.4.2 |
| DESeq2 | 1.2.10 |
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