Table 2.

Coverage of four Cryptosporidium hominis genomes sequenced in this study and sequence similarities to published C. parvum (IOWA) and C. hominis (TU502) genomes

Chromosome	C. parvum length (bp)	37999 (IbA10G2)					30976 (IaA28R4)					30974 (IbA10G2)					33537 (IaA28R4)					TU502 (IaA25R3)
		Contigs mapped	Length (bp)	Coverage (%)	Similarity to IOWA (%)	Similarity to TU502 (%)	Contigs mapped	Length (bp)	Coverage (%)	Similarity to IOWA (%)	Similarity to TU502 (%)	Contigs mapped	Length (bp)	Coverage (%)	Similarity to IOWA (%)	Similarity to TU502 (%)	Contigs mapped	Length (bp)	Coverage (%)	Similarity to IOWA (%)	Similarity to TU502 (%)	Contigs mapped	Length (bp)	Coverage (%)	Similarity to IOWA (%)
1	875659	15	867575	99.08	96.8	99.79	1	873289	99.73	96.81	99.86	36	863586	98.62	96.84	99.82	54	840604	96	96.93	99.86	124	859754	98.18	96.88
2	985969	7	987017	100.11	96.79	99.58	8	983830	99.78	96.82	99.81	41	970191	98.4	96.81	99.77	69	944487	95.8	96.9	99.82	115	946071	95.95	96.73
3	1099352	13	1098355	99.91	96.89	99.62	13	1096430	99.73	96.86	99.79	40	1081251	98.35	96.86	99.75	87	1064015	96.78	96.98	99.81	158	1079381	98.18	96.78
4	1104417	3	1103687	99.93	96.76	99.72	4	1105075	100.06	96.76	99.8	86	1056974	95.7	96.81	99.74	123	1024384	92.75	96.93	99.82	195	1007110	91.19	96.77
5	1080900	13	1092751	101.1	96.78	99.74	11	1107822	102.49	96.78	99.84	71	1013283	93.74	96.93	99.77	118	940540	87.01	97.09	99.83	186	972978	90.02	96.79
6	1332857	5	1304591	97.88	96.91	99.76	2	1298888	97.45	96.93	99.86	66	1263267	94.78	97.01	99.76	124	1237394	92.84	97.09	99.83	192	1240122	93.04	96.82
7	1278458	5	1268482	99.22	97.19	99.79	4	1269257	99.28	97.2	99.87	27	1267106	99.11	97.18	99.82	79	1258429	98.43	97.25	99.88	124	1282777	100.34	97.18
8	1344712	3	1319172	98.1	96.78	99.76	2	1319721	98.14	96.8	99.83	57	1300516	96.71	96.81	99.78	113	1281066	95.26	96.9	99.81	175	1304075	96.98	96.74
Total	9102324	64	9041990	99.34	96.86	99.72	45	9054312	99.47	96.87	99.83	424	8816174	96.93	96.9	99.78	767	8590919	94.36	97	99.83	1269	8692268	95.49	96.84