Table 2.
Gene ontology analysis of Epinephelus coioides larvae
| Cellular component | |||
| Gene Ontology term | Cluster frequency | Genome frequency of use | Corrected P-value |
| Myosin complex | 45 out of 1129 genes, 4.0% | 162 out of 28794 genes, 0.6% | 1.46E-23 |
| Actin cytoskeleton | 79 out of 1129 genes, 7.0% | 656 out of 28794 genes, 2.3% | 1.62E-16 |
| Contractile fiber | 59 out of 1129 genes, 5.2% | 501 out of 28794 genes, 1.7% | 1.28E-11 |
| Extracellular region | 106 out of 1129 genes, 9.4% | 1483 out of 28794 genes, 5.2% | 3.55E-07 |
| Myofibril | 43 out of 1129 genes, 3.8% | 433 out of 28794 genes, 1.5% | 6.02E-06 |
| Sarcomere | 36 out of 1129 genes, 3.2% | 327 out of 28794 genes, 1.1% | 6.05E-06 |
| Contractile fiber part | 36 out of 1129 genes, 3.2% | 332 out of 28794 genes, 1.2% | 8.94E-06 |
| Cytoskeleton | 173 out of 1129 genes, 15.3% | 3012 out of 28794 genes, 10.5% | 3.39E-05 |
| Extracellular region part | 92 out of 1129 genes, 8.1% | 1346 out of 28794 genes, 4.7% | 3.53E-05 |
| Striated muscle thin filament | 9 out of 1129 genes, 0.8% | 25 out of 28794 genes, 0.1% | 5.28E-05 |
| Molecular function | |||
| Hydrolase activity | 283 out of 1138 genes, 24.9% | 5158 out of 28380 genes, 18.2% | 2.08E-06 |
| Cytoskeletal protein binding | 101 out of 1138 genes, 8.9% | 1398 out of 28380 genes, 4.9% | 2.80E-06 |
| Hydrolase activity, acting on acid anhydrides | 132 out of 1138 genes, 11.6% | 2114 out of 28380 genes, 7.4% | 8.62E-05 |
| Pyrophosphatase activity | 131 out of 1138 genes, 11.5% | 2097 out of 28380 genes, 7.4% | 9.39E-05 |
| Biological process | |||
| Lucose metabolic process | 42 out of 1105 genes, 3.8% | 279 out of 27537 genes, 1.0% | 2.39E-10 |
| Hexose metabolic process | 48 out of 1105 genes, 4.3% | 443 out of 27537 genes, 1.6% | 7.72E-07 |
| Muscle system process | 52 out of 1105 genes, 4.7% | 520 out of 27537 genes, 1.9% | 2.54E-06 |
| Small molecule metabolic process | 215 out of 1105 genes, 19.5% | 3657 out of 27537 genes, 13.3% | 4.39E-06 |
| Protein activation cascade | 11 out of 1105 genes, 1.0% | 31 out of 27537 genes, 0.1% | 2.49E-05 |
| Monosaccharide metabolic process | 48 out of 1105 genes, 4.3% | 493 out of 27537 genes, 1.8% | 2.50E-05 |
| Muscle contraction | 37 out of 1105 genes, 3.3% | 328 out of 27537 genes, 1.2% | 2.55E-05 |
| Complement activation | 9 out of 1105 genes, 0.8% | 20 out of 27537 genes, 0.1% | 4.39E-05 |
| Alcohol metabolic process | 69 out of 1105 genes, 6.2% | 854 out of 27537 genes, 3.1% | 4.72E-05 |