Table 2.
Primers used in this study
Primers | Amplified gene(s) | Sequences (5′–3′) | Final concentration (μM) |
Semirandom PCR | |||
ARB1 | GGCCACGCGTCGACTAGTACNNNNNNNNNNGATAT | 0.5 | |
ARB2 | GGCCACGCGTCGACTAGTAC | 0.4 | |
MCL195 | GATCCCGCAGTGGCTCTCTATACAAAGTTG | 0.2 | |
MCL210 | TGGTGCTGACCCCGGATGAAG | 0.4 | |
Confirmation of the transposon insertion site and complementations∗ | |||
PurF-Kpn | purF | ACAGGTACCAGTGATTTTGGCGGGACAC | 0.6 |
PurF-BamHI | ACAGGATCCCCAGGGTGTCGAAGGCC | 0.6 | |
BioA-Kpn | bioA | ACAGGTACCTGAACACCCCCAACATGAGA | 0.6 |
BioA-R_BamHI | ACAGGATCCGATTCGAGGGTAGTGGCGAC | 0.6 | |
CarB-F_BamHI | carB | ACAGGATCCGTTCGTCGATCCCGGCTA | 0.6 |
CarB-R_HindIII | ACAAAGCTTTCGGCGTTTTCCTTGAGG | 0.6 | |
pqsC-Xba | pqsCDE | ACACTCTAGATTCGAACTGGCGTCGCAAC | 0.6 |
pqsC-Hind | ACACAAGCTTTCTTCCAGTCGATAGCCAACC | 0.6 | |
lasA deletion∗ | |||
LasAF-Eco | 5′ lasA region | CCCGGAATTCAGGATAACGTCGGCATGGAC | 0.6 |
LasAR-Bam | CCGCGGATCCTGCTCCAGGTATTCGCTCTTG | 0.6 | |
LasAF-Bam | 3′ lasA region | CCGCGGATCCACCAGATCCAGGTGAGCAACG | 0.6 |
LasAR-Hind | CCCCAAGCTTTCGGAGTCCGGCTACTACGC | 0.6 |
∗Restriction enzyme recognition sites are underlined