Table 2.
QTLs identified
| Trait | Chr | Pos | LOD | %var | add eff | + | Peak marker | CI begin | CI end | Env |
|---|---|---|---|---|---|---|---|---|---|---|
| NUp | 1A | 106 | 3.9 | 16.3 | –0.5 | Sav | wsnp_JD_c6544_7697235 | 87.5 | 221.3 | SBLN8 |
| RCMX | 1A | 70.3 | 2.5 | 8.8 | –0.8 | Sav | GENE-0509_78 | 47.7 | 163.6 | |
| RRAE502 | 2B | 77 | 2.9 | 13.8 | 3.5 | Ria | Tdurum_contig42153_4175 | 54.1 | 114.4 | |
| HT | 2B | 82 | 4.4 | 10.4 | –1.9 | Sav | wsnp_Ku_ c34759_44069854 | 54.1 | 149.4 | NOLN8 |
| RAE2 | 3B | 178.8 | 3.8 | 15.5 | –5.2 | Sav | RAC875_c59977_598 | 161.8 | 190.8 | |
| RRAE251 | 3B | 178.8 | 3.5 | 16.6 | –4.7 | Sav | RAC875_c59977_598 | 154.5 | 182.7 | |
| RRAE951 | 3B | 178.8 | 2.7 | 12.8 | –5.1 | Sav | RAC875_c59977_598 | 148 | 296.4 | |
| RRAE952 | 3B | 178.8 | 3.5 | 14.4 | –4.7 | Sav | RAC875_c59977_598 | 154.5 | 192.4 | |
| RRAE252 | 3D | 5.8 | 2.9 | 13.8 | –3.7 | Sav | BS00004334 | 0 | 36 | |
| RRAE952 | 3D | 5.8 | 3.7 | 15.1 | –4.9 | Sav | BS00004334 | 0 | 36 | |
| RAE2 | 3D | 5.8 | 3.6 | 14.5 | –4.9 | Sav | BS00004334 | 0 | 36 | |
| RMWD | 4D | 4.8 | 2.7 | 13.2 | 0.0 | Ria | wsnp_Ex_c9440_15657149 | 0.8 | 67.6 | |
| GY | 6D | 125.1 | 2.5 | 10.3 | –0.2 | Sav | RAC875_c9618_334 | 53 | 144 | EMHN8 |
| RCHCY | 6D | 4.4 | 22.4 | 68.6 | –17.1 | Sav | wsnp_Ex_c4789_8550135 | 2 | 53 | |
| RTLA | 6D | 4.4 | 24 | 58.7 | –100.8 | Sav | wsnp_Ex_c4789_8550135 | 2 | 53 | |
| RTLS | 6D | 4.4 | 25.6 | 60.9 | –84.5 | Sav | wsnp_Ex_c4789_8550135 | 2 | 53 | |
| RCH | 6D | 4.4 | 17.6 | 52.8 | –3593 | Sav | wsnp_Ex_c4789_8550135 | 2 | 53 | |
| RCMX | 6D | 26 | 2.8 | 10.1 | 0.7 | Ria | wsnp_Ex_c4789_8550135 | 0 | 92.5 | |
| RCMY | 6D | 4.4 | 19.1 | 62.8 | –9.7 | Sav | wsnp_Ex_c4789_8550135 | 2 | 53 | |
| RLC | 6D | 4.4 | 9.1 | 33.7 | –4.2 | Sav | wsnp_Ex_c4789_8550135 | 0 | 53 | |
| RMD | 6D | 4.4 | 22.7 | 61 | –30.1 | Sav | wsnp_Ex_c4789_8550135 | 2 | 53 | |
| RMW | 6D | 4.4 | 6.4 | 28.3 | –16.1 | Sav | wsnp_Ex_c4789_8550135 | 0 | 53 | |
| RTLL | 6D | 4.4 | 6.4 | 25.2 | –16.6 | Sav | wsnp_Ex_c4789_8550135 | 0 | 53 | |
| GY | 7A | 64 | 3.5 | 13.8 | 0.3 | Ria | BS00009677_51 | 49.3 | 151.5 | NOHN8 |
| RSC | 7A | 14.4 | 2.1 | 10.2 | 0.1 | Ria | EXcalibur_c8522_1894 | 0 | 40.2 | |
| GY | 7D | 16 | 3.1 | 12.1 | –0.2 | Sav | wsnp_Ku_c416_869895 | 16 | 38.8 | NOLN9 |
| RCHCX | 7D | 22 | 3 | 14.5 | 1.2 | Ria | wsnp_Ra_ c8297_14095831 | 16 | 101.8 | |
| GY | 7D | 16 | 2.2 | 8.8 | –0.2 | Sav | wsnp_Ku_c416_869895 | 16 | 38.8 | EMLN9 |
| GY | 7D | 16 | 4 | 18.4 | –0.3 | Sav | wsnp_Ku_c416_869895 | 16 | 38.8 | NOHN9 |
| NUp | 7D | 20 | 4.7 | 13.9 | –0.5 | Sav | wsnp_Ra_ c8297_14095831 | 16 | 62.4 | EMHN8 |
| RCMX | 7D | 19 | 2.7 | 9.7 | 0.9 | Ria | wsnp_Ra_ c8297_14095831 | 16 | 38.8 | |
| RTLA | 7D | 27 | 9 | 14.2 | –53.5 | Sav | wsnp_Ra_ c8297_14095831 | 16 | 52 | |
| RTLS | 7D | 27 | 9.7 | 14.5 | –44.5 | Sav | wsnp_Ra_ c8297_14095831 | 16 | 52 | |
| RLC | 7D | 29 | 2.4 | 7.5 | –2.4 | Sav | Kukri_c48125_714 | 16 | 101.8 | |
| RMD | 7D | 30 | 5.8 | 9.6 | –13.3 | Sav | Kukri_c48125_714 | 16 | 52 | |
| RCH | 7D | 34 | 3.5 | 7 | –1702 | Sav | Kukri_c48125_714 | 16 | 62.4 | |
| RTLL | 7D | 31 | 2 | 6.9 | –10.1 | Sav | Kukri_c48125_714 | 16 | 101.8 |
Chr, chromosome; pos, position; %var, percentage variance explained; add eff, additive effect (units as Table 1); +, positive allele coming from Sav (Savannah) or Ria (Rialto); CI, confidence interval; CI begin, start position of CI; CI end, end position of CI; env, environment. For field traits: NO, Norwich; EM, Estrées-Mons; SB, Sutton Bonington; HN, high-N treatment; LN, low-N treatment; number denotes year (8, 2007–8; 9, 2008–9).