Table 2.

Deletion Intervals in FA Genes Determined by aCGH

Family ID	Number of Deletions	Gene	Chr	Deletion Start	Deletion End	BPs	Deleted Exons
1	1	FANCA	16	88,131,700	88,610,500	478,801	1–43
3	1	FANCA	16	88,184,848	88,336,349	151,502	38–43
5	1	FANCA	16	88,227,499	88,446,249	218,751	1–43
6	1	FANCA	16	88,235,249	88,351,749	116,501	31–43
9§	1	FANCA	16	88,281,756	88,827,254	545,499	1–43
12	2 HO	FANCA	16	88,311,999	88,394,999	83,001	9–43
16	1	FANCA	16	88,330,849	88,500,000	169,152	1–43
20	1	FANCA	16	88,334,499	88,393,249	58,751	10–38
22	1	FANCA	16	88,338,249	88,470,249	132,001	1–36
41	1	FANCA	16	88,358,548	88,368,349	9,802	22–28
42	1	FANCA	16	88,358,574	88,359,274	701	28
43	1	FANCA	16	88,364,999	88,388,499	23,501	12–23
61	1	FANCA	16	88,383,499	88,474,299	90,801	1–14
62	1	FANCA	16	88,383,499	88,437,499	54,001	1–14
63_d1	2 HE	FANCA	16	88,383,649	88,386,149	2,501	13–14
64	1	FANCA	16	88,386,749	88,401,249	14,501	7–11
65	1	FANCA	16	88,387,000	88,412,000	25,001	1–11
66	1	FANCA	16	88,387,749	88,432,749	45,001	1–11
69	1	FANCA	16	88,398,749	88,420,249	21,501	1–7
70	1	FANCA	16	88,398,749	88,425,749	27,001	1–7
72	1	FANCA	16	88,399,249	88,412,249	13,001	1–7
84	1	FANCA	16	88,403,105	88,410,000	6,896	2–5
85	1	FANCA	16	88,403,999	88,437,249	33,251	1–5
86	1	FANCA	16	88,404,000	88,405,000	1,001	4–5
88	1	FANCA	16	88,409,549	88,411,749	2,201	1–2
89	1	FANCC	9	96,935,249	96,937,749	2,501	8
96§	1	FANCB	X	14,331,665	14,872,323	540,659	1–10
97	1	FANCD2	3	10,048,249	10,066,749	18,501	2–17
98	1	FANCD2	3	10,066,800	10,071,613	4,813	18

This table excludes deletion intervals that were defined by cloning and sequencing, which are presented in Table 3.

^§denotes breakpoints for deletion determined by SNP array.

Families with two deleted alleles are indicated with 2 in “Number of Deletions” column.

HO = Homozygous

HE = Compound Heterozygous (and distinguished by “_d1” for deletion 1)

The deletion coordinates are according to the NCBI36/hg18 build.