Table 3. Summary of quality trimming statistics for Illumina, 454 and Ion Torrent data.
| Sequencing Platform | Type | No. of reads | Average length | No. of reads after Trim | Average length after Trim | Total Trimmed bases | Fold Coverage |
|---|---|---|---|---|---|---|---|
| Roche 454 | Singletons* Paired end readsShotgun Data | 128,856764,756462,052 | 275151289 | 128,806764,744458,340 | 261144249 | 33,631,416110,124,864114,126,660 | 46x 26x |
| Ion Torrent | Single end reads | 453,686 | 215 | 419,010 | 188 | 78,773,880 | 18x |
| Illumina | Paired end reads | 3,689,644 | 150 | 3,682,655 | 149 | 549,756,956 | 126x |
*The singleton sequences are generated from 454 3 kb sequencing run.