Table 2.
Number of sequences and alpha diversity of all bacterial and eukaryotic communities
| Sample | Effective reads | Operational taxonomic units | Chao 1 | Invsimpson | ACE | Shannon | Good's coverage (%)* |
|---|---|---|---|---|---|---|---|
| Md13B | 3944 | 200 | 681 | 5·84 | 1611 | 2·53 | 95·19 |
| Md23B | 3769 | 136 | 462 | 4·54 | 1005 | 2·08 | 96·84 |
| Md40B | 4687 | 123 | 328 | 2·82 | 602 | 1·75 | 97·40 |
| Md82B | 4107 | 138 | 485 | 4·76 | 1357 | 2·08 | 96·74 |
| Md103B | 4880 | 117 | 315 | 3·03 | 535 | 1·69 | 97·53 |
| Md110B | 4318 | 156 | 548 | 3·88 | 1021 | 2·02 | 96·41 |
| Md172B | 4827 | 162 | 664 | 5·30 | 1763 | 2·25 | 96·08 |
| Md201B | 3034 | 319 | 816 | 5·04 | 1552 | 2·77 | 92·78 |
| Md13E | 3108 | 370 | 728 | 17·3 | 1086 | 3·88 | 93·15 |
| Md23E | 5932 | 387 | 736 | 15·5 | 1065 | 3·82 | 92·83 |
| Md40E | 4496 | 451 | 977 | 20·8 | 1370 | 4·21 | 91·70 |
| Md82E | 6834 | 401 | 742 | 12·4 | 1189 | 3·81 | 92·76 |
| Md103E | 7427 | 331 | 567 | 10·0 | 773 | 3·58 | 94·66 |
| Md110E | 5010 | 408 | 717 | 13·1 | 1017 | 3·87 | 92·92 |
| Md172E | 9846 | 260 | 480 | 7·3 | 697 | 3·06 | 95·56 |
| Md201E | 6165 | 312 | 581 | 8·1 | 734 | 3·33 | 94·76 |
*
Coverage is C = 1 − n/N, where n is the number of operational taxonomic units that have been sampled once, and N is the total number of individuals in the sample.