Table 1. Populus ALDH genes and superfamilies.
| Family | Gene Name | Gene Locus | CDS (bp) | ORF (aa) | pI | MW (kDa) | SubLoc* |
|---|---|---|---|---|---|---|---|
| Family 2 | PtALDH2B4 | Potri.012G078700.1 | 1611 | 536 | 8.74 | 58.65 | mito: 8.5, chlo_mito: 7.5, chlo: 5.5 |
| PtALDH2B6 | Potri.015G074100.1 | 1575 | 524 | 8.68 | 56.89 | mito: 9.5, chlo_mito: 7.5, chlo: 4.5 | |
| PtALDH2B7 | Potri.002G189900.1 | 1623 | 540 | 6.11 | 58.84 | mito: 9.5, chlo_mito: 6.5, chlo: 2.5 | |
| PtALDH2C4 | Potri.018G075000.1 | 1245 | 414 | 6.76 | 45.10 | cysk: 8.0, cyto: 5.0 | |
| Family 3 | PtALDH3F1 | Potri.007G017100.1 | 1443 | 480 | 6.97 | 53.62 | cyto: 5.0, golg: 5.0, plas: 2.0, chlo: 1.0 |
| PtALDH3H1 | Potri.005G179300.1 | 1467 | 488 | 7.08 | 53.50 | cyto: 9.0, chlo: 2.0, cysk: 2.0 | |
| PtALDH3H4 | Potri.002G081800.1 | 1467 | 488 | 7.08 | 53.97 | cyto: 8.0, cysk: 3.0, chlo: 2.0 | |
| PtALDH3H5 | Potri.001G412900.1 | 1647 | 548 | 8.19 | 60.68 | nucl: 6.0, chlo: 4.0, cyto: 3.0 | |
| PtALDH3H6 | Potri.005G069800.1 | 1467 | 488 | 5.68 | 54.12 | cysk: 8.0, cyto: 5.0 | |
| PtALDH3J1 | Potri.001G259100.1 | 1206 | 401 | 9.12 | 44.21 | chlo: 8.0, cyto: 3.0, extr: 2.0 | |
| Family 5 | PtALDH5F1 | Potri.010G174000.1 | 1611 | 536 | 8.46 | 57.50 | mito: 10.0, chlo: 4.0 |
| Family 6 | PtALDH6B3 | Potri.009G078600.1 | 1629 | 542 | 6.68 | 58.01 | mito: 10.5, chlo_mito: 7.5, chlo: 3.5 |
| PtALDH6B4 | Potri.001G283100.1 | 1629 | 542 | 7.00 | 57.90 | mito: 12.0, chlo: 2.0 | |
| PtALDH6B5 | Potri.009G078700.1 | 2142 | 713 | 8.36 | 77.64 | nucl: 7.0, chlo: 2.0, cyto: 2.0, cysk: 2.0 | |
| PtALDH6B7 | Potri.005G147700.1 | 2877 | 958 | 6.76 | 104.53 | nucl: 11.0, chlo: 1.0, vacu: 1.0 | |
| Family 7 | PtALDH7B4 | Potri.003G067700.1 | 1527 | 508 | 5.71 | 54.69 | nucl: 7.0, cyto: 3.0, chlo: 1.0, plas: 1.0, pero: 1.0 |
| PtALDH7B5 | Potri.001G167100.1 | 1527 | 508 | 5.55 | 54.89 | nucl: 7.0, chlo: 3.0, cyto: 2.0, plas: 2.0 | |
| Family 10 | PtALDH10A8 | Potri.012G075600.1 | 1512 | 503 | 5.46 | 54.93 | chlo: 8.0, cyto: 4.0, pero: 2.0 |
| PtALDH10A9 | Potri.015G070600.1 | 1620 | 539 | 5.44 | 59.13 | chlo: 7.0, cyto: 4.0, pero: 2.0 | |
| Family 11 | PtALDH11A3 | Potri.018G109700.1 | 1521 | 506 | 7.86 | 54.30 | cysk: 8.0, cyto: 5.0 |
| PtALDH11A4 | Potri.006G186800.1 | 1497 | 498 | 7.84 | 53.64 | cysk: 10.0, cyto: 4.0 | |
| PtALDH11A5 | Potri.018G020600.1 | 1497 | 498 | 6.72 | 53.44 | cysk: 9.0, cyto: 5.0 | |
| Family 12 | PtALDH12A1 | Potri.015G064200.1 | 1704 | 567 | 7.65 | 62.97 | mito: 8.5, chlo: 5.0, cyto_mito: 5.0 |
| Family 18 | PtALDH18B1 | Potri.010G198400.1 | 2160 | 719 | 6.46 | 77.78 | E.R.: 5.0, chlo: 3.0, nucl: 1.0, cyto: 1.0, mito: 1.0, plas: 1.0, extr: 1.0 |
| PtALDH18B2 | Potri.008G060200.1 | 2148 | 715 | 6.05 | 77.46 | chlo: 4.0, E.R.: 4.0, nucl: 2.0, cyto: 1.0, plas: 1.0, extr: 1.0 | |
| Family 22 | PtALDH22A1 | Potri.008G106000.1 | 1785 | 594 | 6.84 | 65.70 | chlo: 4.0, cyto: 3.5, cyto_nucl: 2.5, plas: 2.0, vacu: 2.0, mito: 1.0 |
Notes: Gene loci are obtained from the Phytozome website (http://www.phytozome.net).
* PSORT predictions: plas (plasma membrane), vacu (vacuolar membrane), cyto (cytosol), chlo (chloroplast), cysk (cytoskeleton), pero (peroxisome), nucl (nuclear), E.R. (endoplasmic reticulum), mito (mitochondrion), golg (golgi), extr (extracellular).
The numbers indicate the number of nearest neighbors to the query which localize to each site.