Table 4. Chessboard Dataset Antibody Channels.
| Ribbon ID > v Channel ID | Ex2R18 | Ex3R43 | Ex6R15 | Ex10R55 |
|---|---|---|---|---|
| List of antibody channels for each ribbon in the Chessboard Dataset (Data Citation 1, Files 8–295 Supplementary Table 1). Channel names are in the form ‘[antibody name]—[imaging round]’. The left-hand column lists channel numeric tokens, which can be used in place of channel names in the OCP hdf5 interface (See Usage Notes: OCP Data Access). NB: certain stains were repeated several times (Ex3R43 vGluT2, Ex10R55 vGAT, Ex14R58 vGluT2 & vGluT2) when initial images were judged of insufficiently high quality (See Table 5). We recommend focusing analysis on the last imaged version of these repeated antibodies, though we make all data available as repeated staining may be of interest. | ||||
| 1 | DAPI-1 | PSD95-2 | DAPI-1 | Arc-5 |
| 2 | DAPI-2 | DAPI-7 | DAPI-2 | Calbindin-7 |
| 3 | DAPI-3 | vGluT2-7 | DAPI-3 | DAPI-1 |
| 4 | DAPI-4 | vGAT-4 | DAPI-4 | DAPI-2 |
| 5 | DAPI-5a | GABAARa1-8 | DAPI-5 | DAPI-3 |
| 6 | DAPI-5b | NR2B-7 | DAPI-6 | DAPI-4 |
| 7 | DAPI-6 | Arc-3 | GABAARa1-6 | DAPI-5 |
| 8 | DAPI-7 | Gephyrin-1 | GAD2-3 | DAPI-6 |
| 9 | GABAARa1-7 | PV25-1 | Gephyrin-2 | DAPI-7 |
| 10 | GAD2-4 | Synaptopodin-7 | GluR1-4 | DAPI-8 |
| 11 | GFP-5b | GAD6567-4 | GluR2-5 | GABAARa1-7 |
| 12 | Gephyrin-1 | NR2A-4 | NR2A-1 | GAD2-3 |
| 13 | GluR1-5a | vGluT2-1 | NR2B-3 | GFP-4 |
| 14 | GluR2-6 | DAPI-8 | PSD95-1 | Gephyrin-2 |
| 15 | GluR4-7 | NR2B-3 | PV25-5 | GluR1-4 |
| 16 | NR2A-2 | GluR2-6 | Synapsin1-2 | GluR2-8 |
| 17 | NR2B-4 | DAPI-6 | Synaptopodin-6 | GluR4-8 |
| 18 | PSD25-2 | GFP-4 | YFP-1 | NR2A-1 |
| 19 | PV25-1 | vGluT1-2 | vGAT-4 | NR2B-3 |
| 20 | Synapsin-3 | GluR4-8 | vGluT1-3 | PSD95-1 |
| 21 | Synaptopodin-6 | GluR1-6 | vGluT2-2 | PV25-5 |
| 22 | YFP-1 | DAPI-1 | Synapsin1-2 | |
| 23 | vGAT-3 | Synapsin1-3 | Synaptopodin-6 | |
| 24 | vGluT1-3 | DAPI-2 | YFP-1 | |
| 25 | vGluT2-2 | DAPI-3 | vGAT-4 | |
| 26 | DAPI-4 | vGAT-5 | ||
| 27 | vGAT-6 | |||
| 28 | vGluT1-3 | |||
| 29 | vGluT2-2 |
| Ribbon ID > v Channel ID | Ex12R75 | Ex12R76 | Ex13R51 | Ex14R58 |
|---|---|---|---|---|
| List of antibody channels for each ribbon in the Chessboard Dataset (Data Citation 1, Files 8–295 Supplementary Table 1). Channel names are in the form ‘[antibody name]—[imaging round]’. The left-hand column lists channel numeric tokens, which can be used in place of channel names in the OCP hdf5 interface (See Usage Notes: OCP Data Access). NB: certain stains were repeated several times (Ex3R43 vGluT2, Ex10R55 vGAT, Ex14R58 vGluT2 & vGluT2) when initial images were judged of insufficiently high quality (See Table 5). We recommend focusing analysis on the last imaged version of these repeated antibodies, though we make all data available as repeated staining may be of interest. | ||||
| 1 | DAPI-1 | DAPI-1 | GFP-4 | Arc-7 |
| 2 | DAPI-2 | DAPI-2 | Synapsin1-2 | DAPI-1 |
| 3 | DAPI-3 | DAPI-3 | vGluT2-2 | GABAARa1-6 |
| 4 | DAPI-4 | DAPI-4 | GluR2-5 | GAD2-3 |
| 5 | DAPI-5 | DAPI-5 | vGluT1-3 | Gephyrin-2 |
| 6 | DAPI-6 | DAPI-6 | Synaptopodin-6 | GFP-5 |
| 7 | GABAARa1-6 | GABAARa1-6 | GABAARa1-6 | GluR1-4 |
| 8 | GAD2-3 | GAD2-3 | DAPI-6 | GluR2-5 |
| 9 | — | — | vGAT-3 | NR2A-1 |
| 10 | — | — | PV25-5 | NR2B-3 |
| 11 | — | — | NR2B-4 | PSD95-1 |
| 12 | Gephyrin-2 | Gephyrin-2 | GluR1-4 | PV25-5 |
| 13 | GluR1-4 | GluR1-4 | GAD2-3 | Synapsin1-2 |
| 14 | GluR2-5 | GluR2-5 | DAPI-5 | Synaptopodin-7 |
| 15 | NR2A-1 | NR2A-1 | DAPI-4 | vGAT-4 |
| 16 | NR2B-4 | NR2B-4 | DAPI-3 | vGluT1-4 |
| 17 | PSD95-1 | PSD95-1 | PSD95-1 | vGluT1-6 |
| 18 | PV25-5 | PV25-5 | NR2A-1 | vGluT2-2 |
| 19 | Synapsin1-2 | Synapsin1-2 | Gephyrin-2 | vGluT2-3 |
| 20 | Synaptopodin-6 | Synaptopodin-6 | DAPI-2 | YFP-1 |
| 21 | YFP-1 | YFP-1 | DAPI-1 | |
| 22 | vGAT-3 | vGAT-3 | ||
| 23 | vGluT1-3 | vGluT1-3 | ||
| 24 | vGluT2-2 | vGluT2-2 | ||
| 25 | ||||
| 26 | ||||
| 27 | ||||
| 28 | ||||
| 29 |