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. 2015 May;145(5):443–456. doi: 10.1085/jgp.201411335

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© 2015 Zheng and Qin

This article is distributed under the terms of an Attribution–Noncommercial–Share Alike–No Mirror Sites license for the first six months after the publication date (see http://www.rupress.org/terms). After six months it is available under a Creative Commons License (Attribution–Noncommercial–Share Alike 3.0 Unported license, as described at http://creativecommons.org/licenses/by-nc-sa/3.0/).

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Figure 2. — Results of NMA for the lowest 20 modes calculated in the absence (red) or presence (green) of lipids. (A) The overlap and cumulative squared overlap as a function of mode number (shown as impulses and lines, respectively). (B) The eigenvalue as a function of mode number. (C) The cumulative flexibility as a function of residue number. (D) The all-to-all pairwise overlaps between the modes calculated in the absence or presence of lipids (with high/low overlap corresponding to light/dark gray). In C, the ranges of residue numbers are colored as follows: red, ARD; green, MPD; cyan, S1–S4 helices; purple, S5–S6 helices; blue, CTD. The positions of residue G643 and I679 are marked by vertical lines. In D, the two cells corresponding to the overlaps of modes 6 and 13 are marked by small circles.