Table 2.
T. gondii miRNAs expressed in human and rodent hosts
| T. gondii hairpin | Human model winner | Rodent model winner | Human expression summed | Rodent expression summed | Human miRNA match | Rodent miRNA match |
|---|---|---|---|---|---|---|
| TGME49_chrIV| 1013750|226 | miRNA | miRNA | 352 | 4 | hsa-let-7i-3p | mmu-let-7i-3p |
| TGME49_chrV| 869500|99 | miRNA | miRNA | 246 | 1 | hsa-miR-6758-3p | NA |
| TGME49_chrXI |5274000|264 | miRNA | miRNA | 16,368 | 62 | NA | NA |
| tgme49_asmbl. 431|0|426 | miRNA | miRNA | 0 | 296 | NA | rco-miR408 |
| tgme49_asmbl. 1387|250|438 | miRNA | miRNA | 0 | 199 | NA | NA |
| TGME49_chrVIIb| 800750|118 | miRNA | miRNA | 2 | 1 | hsa-miR-1277-5p | mmu-miR-466 m-3p |
| TGME49_chrIV| 1013750|226 | miRNA | miRNA | 352 | 4 | hsa-let-7i-3p | mmu-let-7i-3p |
| TGME49_chrVIIb| 3618000|195 | miRNA | miRNA | 146 | 5 | hsa-miR-297 | mmu-miR-297c-5p |
| TGME49_chrIX| 305250|185 | miRNA | miRNA | 106 | 36 | hsa-miR-877-3p | mmu-miR-877-3p |
| TGME49_chrVIIa| 327000|0 | miRNA | miRNA | 70 | 9 | hsa-miR-1281 | mmu-miR-7011-3p |
Note: Selection of 10 representative putative hairpins from Toxoplasma which pass the model threshold of 0.9 and are expressed according to the sample data we used in either or both of the hosts. A more comprehensive list of results can be found in Table S2. NA: not applicable.