Table 4.
Top 10 most highly-expressed genes specific to the Chinese isolates
| Strain | Rank | Gene ID | RPKM | COG ID | Protein |
|---|---|---|---|---|---|
| 05ZYH33 | 1 | SSU05_0582 | 2067.935 | COG3039L | IS5 family transposase |
| 2 | SSU05_1895 | 1461.981 | – | Hypothetical protein | |
| 3 | SSU05_1896 | 1428.723 | COG3871R | Hypothetical protein | |
| 4 | SSU05_0177 | 1284.939 | – | Extracellular protein | |
| 5 | SSU05_0178 | 1190.736 | – | Epf-like protein | |
| 6 | SSU05_0179 | 1149.505 | – | RTX family exoprotein A gene | |
| 7 | SSU05_0373 | 1073.18 | COG1335Q | Nicotinamidase-like amidase | |
| 8 | SSU05_0372 | 782.191 | COG1670J | Histone acetyltransferase HPA2-like acetyltransferase | |
| 9 | SSU05_0553 | 664.709 | – | Hypothetical protein | |
| 10 | SSU05_1990 | 660.201 | COG3481R | HD-superfamily hydrolase | |
| 98HAH33 | 1 | SSU98_0181 | 2124.663 | – | RTX family exoprotein A gene |
| 2 | SSU98_0586 | 1986.35 | COG3039L | IS5 family transposase | |
| 3 | SSU98_0179 | 1799.871 | – | Extracellular protein | |
| 4 | SSU98_0180 | 1684.485 | – | Epf-like protein | |
| 5 | SSU98_1014 | 1076.934 | – | Hypothetical protein | |
| 6 | SSU98_0364 | 1049.139 | COG1335Q | Nicotinamidase-like amidase | |
| 7 | SSU98_1026 | 986.816 | COG0448G | ADP-glucose pyrophosphorylase | |
| 8 | SSU98_1897 | 972.083 | – | Hypothetical protein | |
| 9 | SSU98_0363 | 876.425 | COG1670J | Histone acetyltransferase HPA2-like acetyltransferase | |
| 10 | SSU98_1898 | 796.214 | COG3871R | Hypothetical protein | |
Note: The toxin–antitoxin system components with high transcription level in both virulent isolates are highlighted in bold. RPKM, reads per kilo bases per million reads; COG, clusters of orthologous groups.