. 2014 Dec 16;12(6):266–275. doi: 10.1016/j.gpb.2014.11.001

Table 6.

Novel sRNAs potentially regulating bacterial virulence

Strain	TAR ID	Strand	TAR		Mapped with homologous genes			sRNA		Description
Strain	TAR ID	Strand	Start	End	Start	End	Length	Start	End	Description
05ZYH33	05seq336	−	389,484	392,352	389,489	389,850	362	1	428	cspA: cspA thermoregulator
	05seq972	+	1,825,119	1,830,751	1,830,583	1,830,751	169	1	169	rliD: Listeria sRNA rliD
	05seq1101	+	1,993,916	1,994,224	1,993,916	1,993,992	77	10	91	RatA: RNA anti-toxin A
	05seq710	+	961,698	961,817	961,698	961,817	120	15	134	rli38: Listeria sRNA rli38

98HAH33	98seq331	−	391,826	392,204	391,827	392,185	359	1	428	cspA: cspA thermoregulator
	98seq1086	−	2,057,227	2,057,829	2,057,231	2,057,296	66	1	71	STnc370: Enterobacterial sRNA STnc370
	98seq1021	+	1,824,549	1,830,052	1,829,956	1,830,052	97	1	97	rliD: Listeria sRNA rliD
	98seq1137	+	1,993,284	1,993,592	1,993,284	1,993,360	77	10	91	RatA: RNA anti-toxin A
	98seq696	+	961,400	961,519	961,400	961,519	120	15	134	rli38: Listeria sRNA rli38

P1/7	17seq501	−	635,186	635,918	635,187	635,263	77	1	77	isrK: isrK Hfq binding RNA
	17seq1095	−	1,905,111	1,905,186	1,905,111	1,905,186	76	1	91	RatA: RNA anti-toxin A
	17seq916	+	1,736,325	1,741,929	1,741,790	1,741,929	140	1	140	rliD: Listeria sRNA rliD

Note: TAR, transcriptionally-active region. Mapped starts and ends indicate the region of TARs that is aligned with homologous genes. Starts and ends of sRNA indicate the corresponding part of sRNA. TARs that are shared in all three strains are highlighted in bold in description.