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. 2015 Apr 19;16:123. doi: 10.1186/s12859-015-0554-8

Figure 3.

Figure 3

Feature encoding scheme. A genomic variant is translated into wild and mutated amino acid sequences. The difference in terms of PseAAC features is computed and is given as input to the trained RF model along with evolutionary conservation scores and several full-length protein attributes. PolyPhen2, SIFT and RF results are finally combined together to obtain the final PaPI class and score.