Table 1. Distribution of alternative sequences in the four types of H. pylori CagA TPMsa.
Number | ||||||
---|---|---|---|---|---|---|
TPM type | Total | EPIYA | EPIYT | ESIYA | ESIYT | Other |
(n = 7954) | (n = 7207) (%) | (n = 478) | (n = 96) | (n = 60) | (n = 113) | |
A | 2521 | 2517 (99.8) | 4 | 0 | 0 | 0 |
Bb | 2617 | 1899 (72.6) | 474 | 96 | 60 | 88c |
C | 1620 | 1595 (98.5) | 0 | 0 | 0 | 25d |
D | 1196 | 1196 (100) | 0 | 0 | 0 | 0 |
a From review of Genbank entries to Aug. 8, 2013.
bB-TPM bolded, since most variable.
c B-domain other TPMs include: GSIYD (31), EPVYA (13), ELIYA (12), ESIYD (7), ETIYA (3), EPIYD (3), EHIYA (2), EPTYA (2), EPIYS (2), EPIYV (2), ESVYA (2), DPIYA (1), DPIYD (1), EPVYT (1), QPIYP (1), EPIFT (1), EPIHA (1), EPINA (1), ESIYS (1), EFIYT (1).
d The C-domain other TPMs all are EPIYV (25), which only is present when the B-domain sequence is GSIYD (p<0.0001).