Table 3.
Number of significant differential binding regions.
| Pol2 Odd vs. Even | c-Myc stanford vs. yale | TCF Hek293 vs. HelaS3 | NRF1 Gm878 vs. H1esc | GR High vs. Low | ERa bpa vs. est | |
|---|---|---|---|---|---|---|
| Non-overlap | 4885 | 17,962 | 5314 | 1497 | 17,339 | 15,730 |
| edgeR efflib | 0 | 292 | 5199 | 1687 | 4318 | 223 |
| edgeR fulllib | 0 | 0 | 4627 | 1738 | 17,246 | 10,986 |
| DiffBind efflib | 5 | 411 | 5238 | 1732 | 2908 | 9 |
| DiffBind fulllib | 46 | 7 | 4663 | 1594 | 17,233 | 9063 |
| MAnorm3 | 0 | 1991 | 5063 | 1638 | 14,249 | 897 |
| voom fulllib | 0 | 1 | 4496 | 1206 | 17,215 | 10,914 |
| Number of peaks | 16,278 | 22,828 | 5976 | 4089 | 17,439 | 15,968 |
This table shows the number of significantly differential binding sites for each of the methods where significant differential is defined as FDR adjusted p-value of less than 0.05 except for non-overlap where non-overlap is the sum of the unique sites.