Table 1. Sequences and annealing temperature of the primers used for the characterization of Lama glama casein genes cluster.
Gene | Region covered | Position | Primer | Sequence | Ta(°C) |
---|---|---|---|---|---|
CSN1S1 | 5’-flanking region | Promoter | Forward* | 5’-GGGAATCTTATTGATGTAACAGT-3’ | 60.5 |
Exon1 | Reverse | 5’-GGGAAGAAGCAGCAAACT-3’ | |||
cDNA | Exon 1 | Forward* | 5’-AGTTTGCTGCTTCTTCCC-3’ | 61.0 | |
Exon 21 | Reverse* | 5’-ATGGCAGTTACAGGAGAAG -3’ | |||
3’-flanking region | Exon 21 | Forward | 5’-AGTATGAAGGCCACCAAATA-3’ | 61.5 | |
3’-end | Reverse* | 5’-CTCTGTTCCCACACCTTT-3’ | |||
CSN2 | 5’-flanking region | Promoter | Forward* | 5’-GTTTCTCCATTACAGCATC-3’ | 60.0 |
Intron 1 | Reverse † | 5’-TCAAATCTATACAGGCACTT-3’ | |||
cDNA | Exon 1 | Forward † | 5’-TTCACTTCTTTTCCTCCAC-3’ | 62.0 | |
Exon 9 | Reverse † | 5’-TAGTTTATTGAAGTGACTGGT-3’ | |||
3’-flanking region | Exon 9 | Forward | 5’-GGCACCTTTTCAATCTTT-3’ | 61.4 | |
3’-end | Reverse* | 5’-TGTAATAGTTTAGCTGAGAT-3’ | |||
CSN1S2 | 5’-flanking region | Promoter | Forward* | 5’-AACTAATATGAGAGCTGAG-3’ | 60.5 |
Exon1 | Reverse | 5’-TGAAGGGAAGACAAGTA-3’ | |||
cDNA | Exon 1 | Forward* | 5’- CACTGCCTGGACTACTT-3’ | 60.5 | |
Exon 17 | Reverse* | 5’- TCAAAGAGTAGTGAAAACATTTTC-3’ | |||
3’-flanking region | Exon 17 | Forward | 5’-AGACTGTGCAGAATATTTCC-3’ | 60.3 | |
3’-end | Reverse* | 5’-ATGTGAACTGGGAGGAG-3’ | |||
CSN3 | 5’-flanking region | Promoter | Forward # | 5’-CACAAAGATGACTCTGCTATCG-3’ | 62.0 |
Intron1 | Reverse # | 5’-AGAAGTTAGCCCTCCACAT-3’ | |||
cDNA | Exon 1 | Forward # | 5’-GGCCAGCTCAACCTACT-3’ | 55.0 | |
Exon 6 | Reverse # | 5’-GCATTCAATTAGCTTTATTA -3’ | |||
3’-flanking region | Exon 6 | Forward | 5’-GTCTTGCTGAAACCAAA-3’ | 56.5 | |
3’-end | Reverse* | 5’-ATTCCCGAGAGCAATTT-3’ |
Asterisks refer to primers designed on ferus camel genome sequence available in gene bank (EMBL acc. no. AGVR01039100.1); crosses and hashes indicate primers designed on camel CSN2 (EMBL acc. No. HG969421) and CSN3 (EMBL acc. No. HE863813) sequences respectively, whereas the other primers were designed on newly determined llamas cDNA sequences.