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. 2015 Apr 29;10(4):e0124963. doi: 10.1371/journal.pone.0124963

Table 1. Sequences and annealing temperature of the primers used for the characterization of Lama glama casein genes cluster.

Gene Region covered Position Primer Sequence Ta(°C)
CSN1S1 5’-flanking region Promoter Forward* 5’-GGGAATCTTATTGATGTAACAGT-3’ 60.5
Exon1 Reverse 5’-GGGAAGAAGCAGCAAACT-3’
cDNA Exon 1 Forward* 5’-AGTTTGCTGCTTCTTCCC-3’ 61.0
Exon 21 Reverse* 5’-ATGGCAGTTACAGGAGAAG -3’
3’-flanking region Exon 21 Forward 5’-AGTATGAAGGCCACCAAATA-3’ 61.5
3’-end Reverse* 5’-CTCTGTTCCCACACCTTT-3’
CSN2 5’-flanking region Promoter Forward* 5’-GTTTCTCCATTACAGCATC-3’ 60.0
Intron 1 Reverse 5’-TCAAATCTATACAGGCACTT-3’
cDNA Exon 1 Forward 5’-TTCACTTCTTTTCCTCCAC-3’ 62.0
Exon 9 Reverse 5’-TAGTTTATTGAAGTGACTGGT-3’
3’-flanking region Exon 9 Forward 5’-GGCACCTTTTCAATCTTT-3’ 61.4
3’-end Reverse* 5’-TGTAATAGTTTAGCTGAGAT-3’
CSN1S2 5’-flanking region Promoter Forward* 5’-AACTAATATGAGAGCTGAG-3’ 60.5
Exon1 Reverse 5’-TGAAGGGAAGACAAGTA-3’
cDNA Exon 1 Forward* 5’- CACTGCCTGGACTACTT-3’ 60.5
Exon 17 Reverse* 5’- TCAAAGAGTAGTGAAAACATTTTC-3’
3’-flanking region Exon 17 Forward 5’-AGACTGTGCAGAATATTTCC-3’ 60.3
3’-end Reverse* 5’-ATGTGAACTGGGAGGAG-3’
CSN3 5’-flanking region Promoter Forward # 5’-CACAAAGATGACTCTGCTATCG-3’ 62.0
Intron1 Reverse # 5’-AGAAGTTAGCCCTCCACAT-3’
cDNA Exon 1 Forward # 5’-GGCCAGCTCAACCTACT-3’ 55.0
Exon 6 Reverse # 5’-GCATTCAATTAGCTTTATTA -3’
3’-flanking region Exon 6 Forward 5’-GTCTTGCTGAAACCAAA-3’ 56.5
3’-end Reverse* 5’-ATTCCCGAGAGCAATTT-3’

Asterisks refer to primers designed on ferus camel genome sequence available in gene bank (EMBL acc. no. AGVR01039100.1); crosses and hashes indicate primers designed on camel CSN2 (EMBL acc. No. HG969421) and CSN3 (EMBL acc. No. HE863813) sequences respectively, whereas the other primers were designed on newly determined llamas cDNA sequences.