Table 2. Alignment time/indexing memory for all aligners on different datasets.
| C. elegans (sec/MB) | ||||
|---|---|---|---|---|
| abyss-map | bwa | bowtie | novoalign | |
| 1-node | 2154/1100 | 945/156 | 1700/274 | 19671/589 |
| 2-node | 1261/522 | 667/80 | 1014/163 | 6305/263 |
| 4-node | 893/238 | 574/65 | 737/99 | 5184/151 |
| 8-node | 723/120 | 526/134 | 595/62 | 4788/69 |
| 12-node | 700/81 | 547/89 | 601/46 | 4464/50 |
| human draft assembly (min/MB) | ||||
| abyss-map | bwa | bowtie | novoalign | |
| 1-node | 652/31000 | 407/4400 | 1174/6100 | 59125/9300 |
| 2-node | 472/15000 | 254/2200 | 611/2900 | 35728/4100 |
| 4-node | 343/8100 | 216/1100 | 493/1600 | 23311/3700 |
| 8-node | 253/4100 | 191/559 | 371/977 | 17485/2100 |
| 12-node | 210/2700 | 181/372 | 296/590 | 13141/1200 |
| hg19 (min/MB) | ||||
| abyss-map | bwa | bowtie | novoalign | |
| 1-node | 444/33823 | 379/4709 | 996/5528 | NA |
| 2-node | 323/16911 | 254/2354 | 512/3042 | NA |
| 4-node | 232/8455 | 205/1177 | 352/1417 | NA |
| 8-node | 173/4227 | 171/588 | 254/667 | NA |
| 12-node | 160/3170 | 164/441 | 226/495 | NA |
| Picea glauca (min/GB) | ||||
| abyss-map | bwa | bowtie | novoalign | |
| 1-node | NA | NA | NA | NA |
| 2-node | 1201/184 | NA | NA | NA |
| 4-node | 827/81 | NA | NA | NA |
| 8-node | 638/45 | NA | NA | NA |
| 12-node | 574/31 | NA | NA | NA |