Table 2.
Functional categorization of up- and down-regulated genes after treatments with SA and CHI
| Categories* | Name | Number of transcripts | |||
|---|---|---|---|---|---|
| UP SA | DOWN SA | UP CHI | DOWN CHI | ||
| Biological process | Metabolic process | 179 | 122 | 81 | 221 |
| Cellular process | 161 | 137 | 79 | 229 | |
| Response to stimulus | 68 | 59 | 20 | 70 | |
| Biological regulation | 47 | 49 | 28 | 93 | |
| Localization | 42 | 30 | 16 | 47 | |
| Multicellular organismal process | 25 | 20 | 8 | 44 | |
| Developmental process | 23 | 22 | 8 | 44 | |
| Multi-organism process | 17 | 7 | 4 | 13 | |
| Cellular component organization | 15 | 16 | 8 | 25 | |
| Signaling | 9 | 17 | 10 | 18 | |
| Total annotations | 586 | 479 | 262 | 804 | |
| Cellular component | Cell | 196 | 142 | 102 | 283 |
| Organelle | 140 | 98 | 73 | 197 | |
| Macromolecular complex | 42 | 12 | 22 | 40 | |
| Membrane-enclosed lumen | 9 | 4 | 4 | 11 | |
| Extracellular region | 8 | 3 | 3 | 4 | |
| Total annotations | 395 | 259 | 204 | 535 | |
| Molecular function | Binding | 157 | 140 | 77 | 281 |
| Catalytic activity | 149 | 123 | 74 | 217 | |
| Transporter activity | 25 | 25 | 7 | 33 | |
| Electron carrier activity | 15 | 3 | 15 | 5 | |
| Structural molecule activity | 14 | 2 | 7 | 4 | |
| Molecular transducer activity | 11 | 9 | 7 | 17 | |
| Enzyme regulator activity | 8 | 6 | 3 | 2 | |
| Antioxidant activity | 5 | 0 | 2 | 3 | |
| Transcription regulator activity | 1 | 5 | 6 | 23 | |
| Total annotations | 385 | 313 | 198 | 585 | |
*Individual gene products may be assigned to more than one functional category.