Skip to main content
. 2015 Apr 17;16(Suppl 6):S1. doi: 10.1186/1471-2105-16-S6-S1

Table 1.

Main publicly available R packages that solves the Lasso and other sparse penalties for the Cox, logistic or conditional logistic models (surveyed October 1st, 2014).

Package 1:1 matching? 1:M matching? Amenable to processing of with grouping penalties with large N K:M matching?
Logistic Model
glmpath [42] NO NO NO NO NO
penalized [49] YES NO NO NO NO
glmnet [24] NO NO NO NO NO

Cox Model
glmpath [42] NO NO NO NO NO
penalized [49] YES YES NO NO NO
glmnet [50] NO NO NO NO NO

Conditional Logistic
pclogit [21] YES YES YES NO NO
clogitL1 [23] YES YES NO NO YES
clogitLasso [43,51] YES YES NO YES NO