Table 3. Lists p-value and fold-change for all the nlincRNAs that are differentially regulated along with their neighboring genes in cancer.

Gene / TCONS_ID	DESeq				EdgeR
	5 Sample		Chinese Sample		5 Sample		Chinese Sample
	pvalue	foldchange	pvalue	foldchange	pvalue	foldchange	pvalue	foldchange
TCONS_00029157	0.02	-1.23	0.00	-2.02	0.01	-1.17	0.00	-2.20
SIK1	0.00	-0.96	0.01	-1.50	0.00	-1.02	0.04	-1.51
TCONS_00004663	0.00	2.54	0.00	2.69	0.00	2.52	0.00	2.53
TCONS_00004664	0.00	3.01	0.00	2.69	0.00	3.00	0.00	2.53
TCONS_00004665	0.00	3.25	0.00	2.69	0.00	3.27	0.00	2.53
TCONS_00004666	0.00	2.66	0.00	2.69	0.00	2.66	0.00	2.53
TCONS_00004668	0.00	1.73	0.00	3.20	0.00	1.75	0.00	2.93
TCONS_00004669	0.00	1.99	0.00	3.20	0.00	1.99	0.00	2.93
TPO	0.00	2.37	0.00	3.56	0.00	2.31	0.00	3.56
TCONS_00010581	0.01	-0.88	0.00	-0.61	0.01	-0.96	0.00	-0.73
EZH2	0.01	1.15	0.03	1.26	0.01	1.10	0.00	1.24
TCONS_00025002	0.04	0.87	0.05	1.31	0.01	0.91	0.02	1.13
TOX3	0.00	1.91	0.01	1.40	0.01	1.86	0.01	1.40
TCONS_00017728	0.04	-1.85	0.00	-2.80	0.01	-1.81	0.00	-3.00
GATA3	0.05	-0.86	0.00	-2.32	0.06	-0.92	0.00	-2.33
TCONS_00010086	0.03	1.07	0.01	2.04	0.01	1.13	0.00	1.83
ADAMTS19	0.45	0.62	0.00	4.90	0.65	0.56	0.17	4.88
TCONS_00014531	0.01	1.85	0.03	1.90	0.00	1.80	0.01	1.77
TCONS_00015169	0.00	1.29	0.00	2.24	0.00	1.34	0.00	2.08
TCONS_00015171	0.01	1.90	0.00	2.00	0.00	1.92	0.00	1.83
POU5F1B	0.01	1.60	0.01	1.42	0.11	1.62	0.00	1.41
TCONS_00028940	0.00	3.10	0.02	3.08	0.00	3.09	0.00	3.02
TMPRSS2	0.82	-0.09	0.30	0.54	0.88	-0.15	0.32	0.54