Table 3.
Table of ranked gene expression in arginase-sensitive vs resistant cells as determined via RNA-seq
| Rank | Gene | Ensembl ID | Name | log2 (fold change) | P | q |
|---|---|---|---|---|---|---|
| 1 | EREG | ENSG00000124882 | Epiregulin | 4.61947 | 5 × 10−5 | 0.03 |
| 2 | CCL4 | ENSG00000129277 | Chemokine (C-C motif) ligand 4 | −3.42043 | 5 × 10−5 | 0.03 |
| 3 | ZIC5 | ENSG00000139800 | Zic family member 5 | >30 | 5 × 10−5 | 0.03 |
| 4 | EN2 | ENSG00000164778 | Engrailed homeobox 2 | >30 | 5 × 10−5 | 0.03 |
| 5 | HSPA6 | ENSG00000173110 | Heat shock 70-kDa protein 6 | −4.11747 | 5 × 10−5 | 0.03 |
| 6 | RGL3 | ENSG00000205517 | Ral guanine nucleotide dissociation stimulator-like 3 | >30 | 5 × 10−5 | 0.03 |
| 7 | C17orf98 | ENSG00000214556 | Chromosome 17 open reading frame 98 | >30 | 5 × 10−5 | 0.03 |
| 8 | RP11-65C6.1 | ENSG00000217684 | Ribosomal protein S3a pseudogene | >30 | 5 × 10−5 | 0.03 |
| 9 | EIF3EP2 | ENSG00000224674 | Eukaryotic translation initiation factor 3, subunit E pseudogene 2 | >30 | 5 × 10−5 | 0.03 |
| 10 | RP1-272E8.1 | ENSG00000225066 | X chromosome processed pseudogene | >30 | 5 × 10−5 | 0.03 |
| 11 | AC009313.2 | ENSG00000232337 | Pseudogene | >30 | 5 × 10−5 | 0.03 |
| 12 | AC007386.2 | ENSG00000237638 | Pseudogene | >30 | 5 × 10−5 | 0.03 |
| 13 | DDR1-AS1 | ENSG00000237775 | DDR1 antisense RNA 1 | >30 | 5 × 10−5 | 0.03 |
| 14 | IGKV1-17 | ENSG00000240382 | Immunoglobulin κ variable 1-17 | >30 | 5 × 10−5 | 0.03 |
| 15 | OR10J2P | ENSG00000248642 | Olfactory receptor, family 10, subfamily J, member 2 pseudogene | >30 | 5 × 10−5 | 0.03 |
| 16 | RP11-263I1.1 | ENSG00000248659 | lncRNA | >30 | 5 × 10−5 | 0.03 |
| 17 | CIR1P1 | ENSG00000253146 | Corepressor interacting with RBPJ, 1 pseudogene 1 | >30 | 5 × 10−5 | 0.03 |
| 18 | NF1P1 | ENSG00000258997 | Neurofibromin 1 pseudogene 1 | >30 | 5 × 10−5 | 0.03 |
| 19 | RP11-476D10.1 | ENSG00000260943 | lncRNA | >30 | 5 × 10−5 | 0.03 |
| 20 | RP11-152O14.1 | ENSG00000261749 | lncRNA | >30 | 5 × 10−5 | 0.03 |
lncRNA, long noncoding RNA.