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. Author manuscript; available in PMC: 2016 May 15.
Published in final edited form as: J Immunol. 2015 Apr 17;194(10):5022–5034. doi: 10.4049/jimmunol.1402335

Table 1.

List of autoantigen epitopes used for reactivity comparisons between B6 and BXD2 mice

Category A. Nuclear
AgResidue Peptide Uniprot ID
La13–27 LEAKICHQIEYYFGD* P05455
U1snRNP-70357–373 SHRSERERRRDRDRDRD* P08621
U1snRNP-70112–128 YDTTESKLRREFEVYGP* P08621
U1snRNP-70245–254 SRERDKERER P08621
U1snRNP-7060–74 AETREERMERKRRE P08621
U1snRNP-70141–157 GKPRGYAFIEYEHERDM P08621
U1snRNP-70107–123 VARVNYDTTESKLRREF P08621
U1snRNP-SmD197–109 RGRGRGRGRGRGR P62314
HNRNPA2B131–43 ETTEESLRNYYEQ P22626
p70519–535 GSLVDEFKELVYPPDYN P12956
Ro52197–207 LQELEKDEREQ P19474
Ro52180–196 AEFVQQKNFLVEEEQRQ P19474
Ro52218–234 LAQQSQALQELISELDR P19474
Ro5213–27 EVTCPICLDPFVEPV P19474
Ro60480–487 AIALREYR P10155
Ro60505–518 GFTIADPDDRGMLD P10155
CENP-A-110–24 PEAPRRRSPSPTPTP P49450
CENP-A-222–31 PTPGPSRRGP* P49450
CENP-A-397–111 AAEAFLVHLFEDAYL* P49450
CENP-A-47–16 SRKPEAPRRR* P49450
CENP-E121–135 PDREFLLRVSYMEIY Q02224
CENP-B193–207 SATETSLWYDFLPDQ P07199
Histone H1b205–219 KPKAAKPKKAAAKKK* P10412
Histone H1b145–160 ATPKKSAKKTPKKAKK P10412
Histone H1b171–186 KSPKKAKAAKPKKAPK P10412
Histone H2b62–81 IMNSFVTDIFERIASEASRL P62807
Histone H2b [cit]62–81 IMNSFVTDIFEZIASEASZL P62807
DNA Topo229–243 PPYEPLPENVKFYYD P11387
DNA Topo197–211 KEEEQKWKWWEEERY P11387
RNA Pol 3 RPC11320–1334 SFEKTADHLFDAAYF O14802
RNA Pol 3 RPC2557–571 NTFRLMRRAGYINEF Q9NW08
Category B. Matrix
AgResidue Peptide Uniprot ID
Collagen α-1(II) 558–569 GARGLTGRPGDA P02458
Collagen α-1(II) 558–569 GARGLTGRPGDA P02458
Collagen α-1(II) [cit] 558–569 GAZGLTGZPGDA P02458
COMP472–488 DDDNDGVPDSZDNCZLV P49747
COMP [cit] 472–488 DDDNDGVPDSRDNCRLV P49747
Fibrinogen-α396–410 DSPGSGNARPNNPDW P02671
Fibrinogen-α [cit] 396–410 DSPGSGNAZPNNPDW P02671
fibrinogen α183–197 SCSRALAREVDLKDY P02671
Fibrinogen-α [cit] 183–197 SCSZALAZEVDLKDY P02671
Fibrinogen-α27–43 FLAEGGGVRGPRVVERH P02671
Fibrinogen-α [cit] 27–43 FLAEGGGVZGPRVVERH P02671
Fibrinogen β420–434 PRKQCSKEDGGGWWY* P02675
Fibrinogen-β[Cit] 420–434 PZKQCSKEDGGGWWY* P02675
Fibrinogen-β433–447 WYNRCHAANPNGRYY P02675
Fibrinogen-β [Cit] 433–447 WYNZCHAANPNGZYY P02675
Fibrinogen-β60–74 RPAPPPISGGGYRAR P02675
Fibrinogen-β [cit] 60–74 ZPAPPPISGGGYZAZ P02675
Fibromodulin249–265 LYMEHNNVYTVPDSYFR* Q06828
Fibromodulin [cit] 249–265 LYMEHNNVYTVPDSYFZ* Q06828
Filaggrin327–340 EQSRDGSRHPRSHD P20930
filaggrin [cit] 327–340 EQSRDGSZHPRSHD P20930
Filaggrin1363–1385 QSADSSRHSGSGH P20930
filaggrin [cit] 1363–1385 QSADSSZHSGSGH P20930
Filaggrin263–276 TGTSTGGRQGSHHE Q03838
filaggrin [cit] 263–276 TGTSTGGZQGSHHE Q03838
Vimentin184–200 RLREKLQEEMLQREEAE P08670
Category C. Enzyme/Chaperone
AgResidue Peptide Uniprot ID
BCKDHB18–27 GAEGHWRRLP P21953
HSP65113–127 EGMRFDKGYISGYFV E5FHX3
HSP60444–460 LLRVIPALDSLTPANED P10809
Bip-1525–541 TITNDQNRLTPEEIERM* P11021
Bip-1[cit]525–541 TITNDQNZLTPEEIERM* P11021
Bip-2298–314 ALSSQHQARIEIESFYE* P11021
Bip-2[cit] 298–314 ALSSQHQAZIEIESFYE* P11021
Bip249–265 GDTHLGGEDFDQRVMEH P11021
Bip530–546 QNRLTPEEIERMVNDAE P11021
Citrate synthase354–363 DPRYTCQREF O75390
Clusterin367–376 NWVSRLANLTQGEDQYY P10909
Clusterin [cit] 367–376 NWVSZLANLTQGEDQYY P10909
α-Enolase254–270 SGKYDLDFKSPDDPSRY P06733
α-Enolase 1 [cit] 254–270 SGKYDLDFKSPDDPSZY P06733
GAD65-2507–523 WYIPPSLRTLEDNEERM Q05329
GAD65-2564–580 PAATHQDIDFLIEEIER Q05329
GPI72–88 AKSRGVEAARERMFNGE P06744
GPI-[cit]72–88 AKSZGVEAAZEZMFNGE P06744
GPI437–453 MRGKSTEEARKELQAAG P06744
GPI-[cit]437–453 MZGKSTEEAZKELQAAG P06744
MPO197–211 RWLPAEYEDGFSLPY P05164
MPO561–575 NQIAVDEIRERLFEQ P05164
PAD-4141–157 WGPCGQGAILLVNCDRD Q9UM07
*

Grey highlight, used in ELISA, ELISPOT, and/or tetramer analysis

[cit] or Z = citrullinated arginine