Table 1.
MACE and sRNA-seq read statistics
| a) MACE | |||||
|---|---|---|---|---|---|
| Condition | Sample | Raw Reads | PCR-Duplicate removed | Region of interest | Sign. Upreg. RNAs |
| N1 | 20,406,430 | 11,609,003 | 7,811,603 | ||
| N2 | 13,749,503 | 8,791,698 | 6,033,792 | ||
| Normal | N3 | 17,404,996 | 10,701,183 | 7,024,298 | 963 |
| N4 | 14,868,474 | 9,666,314 | 6,411,998 | ||
| N5 | 18,213,260 | 10,782,506 | 7,353,927 | ||
| P1 | 8,706,841 | 7,921,368 | 4,377,691 | ||
| P2 | 9,940,175 | 8,802,579 | 4,250,025 | 1,041 | |
| PDAC | P3 | 8,463,912 | 7,489,546 | 4,150,706 | |
| P4 | 8,438,058 | 7,612,616 | 4,422,792 | ||
| P5 | 13,350,594 | 11,634,367 | 5,405,594 | ||
| P6 | 9,218,757 | 8,161,312 | 4,607,707 | ||
| b) sRNA-seq | |||||
| N1 | 19,268,787 | 9,886,904 | 6,603,800 | ||
| N2 | 33,372,333 | 15,945,439 | 11,007,400 | ||
| Normal | N3 | 22,217,672 | 11,571,686 | 7,773,570 | 45 |
| N4 | 27,924,894 | 6,763,260 | 5,439,290 | ||
| N5 | 23,421,799 | 9,025,877 | 6,482,120 | ||
| P1 | 24,349,755 | 9,837,308 | 6,887,790 | ||
| P2 | 15,855,377 | 6,966,105 | 5,063,220 | 78 | |
| PDAC | P3 | 19,711,102 | 9,580,636 | 6,321,340 | |
| P4 | 25,889,624 | 10,404,479 | 7,344,910 | ||
| P5 | 22,130,647 | 11,117,354 | 7,402,310 | ||
| P6 | 19,639,470 | 8,440,144 | 5,964,730 |
For each sample of control (N) and PDAC (P) tissues the number of raw sequencing reads, PCR duplicate-free reads, reads mapped to regions of interest (exons -MACE or small ncRNAs -sRNA-seq) and the number of deregulated RNAs is provided for MACE and sRNA-seq libraries, respectively.