Table 3.
Differentially expressed lncRNAs
| lncRNA | NEV Normal | NEV PDAC | Log2 FC | FDR | Class | Regulation | PED | Other |
|---|---|---|---|---|---|---|---|---|
| LINC00671 | 81.13 | 0.47 | 7.45 | 0.0000000 | lincRNA | DOWN | ||
| DGCR5 | 83.72 | 2.89 | 4.86 | 0.0000000 | lncRNA | DOWN | ||
| LINC00261 | 278.16 | 7.04 | 5.30 | 0.0000000 | lincRNA | DOWN | D [24] | |
| TRHDE-AS1 | 24.54 | 1.05 | 4.54 | 0.0000015 | NAT | DOWN | ||
| PITPNA-AS1 | 94.22 | 16.50 | 2.51 | 0.0000085 | NAT | DOWN | ||
| lincRNA | 820.02 | 190.34 | 2.11 | 0.0000189 | ncRNA | DOWN | ||
| SNHG9 | 595.61 | 149.36 | 2.00 | 0.0000217 | lincRNA | DOWN | ||
| lincRNA | 27.79 | 134.36 | −2.27 | 0.0000230 | ncRNA | UP | U [24] | |
| CEBPA-AS1 | 37.03 | 5.21 | 2.83 | 0.0000629 | NAT | DOWN | ||
| lincRNA | 357.77 | 90.05 | 1.99 | 0.0000661 | ncRNA | DOWN | ||
| SCARNA22 | 56.28 | 7.07 | 2.99 | 0.0001779 | ncRNA | DOWN | ||
| SCARNA2 | 27.72 | 4.21 | 2.72 | 0.0002533 | ncRNA | DOWN | ||
| HNF1A-AS1 | 72.29 | 10.99 | 2.72 | 0.0002943 | NAT | DOWN | U [26] | |
| SDCBP2-AS1 | 18.87 | 1.90 | 3.31 | 0.0002948 | NAT | DOWN | ||
| NAT | 23.83 | 3.16 | 2.91 | 0.0003537 | ncRNA | DOWN | ||
| NAT | 11.60 | 56.22 | −2.28 | 0.0003752 | ncRNA | UP | U | |
| LINC00339 | 355.98 | 10.67 | 5.06 | 0.0004037 | lincRNA | DOWN | ||
| TMEM44-AS1 | 36.53 | 7.99 | 2.19 | 0.0009294 | NAT | DOWN | ||
| LINC00263 | 44.69 | 10.62 | 2.07 | 0.0010579 | lincRNA | DOWN | ||
| lncRNA | 10.01 | 46.87 | −2.23 | 0.0011936 | ncRNA | UP | U | |
| NAPA-AS1 | 25.94 | 4.71 | 2.46 | 0.0012669 | NAT | DOWN | ||
| LINC00340 | 4.16 | 28.42 | −2.77 | 0.0013636 | lincRNA | UP | ||
| EPB41L4A-AS1 | 303.58 | 97.66 | 1.64 | 0.0015839 | NAT | DOWN | ||
| SERTAD4-AS1 | 3.19 | 22.21 | −2.80 | 0.0016944 | NAT | UP | ||
| LHFPL3-AS2 | 20.61 | 3.08 | 2.74 | 0.0023207 | NAT | DOWN | ||
| LINC00673 | 8.59 | 42.30 | −2.30 | 0.0023447 | lincRNA | UP | ||
| DNAJC27-AS1 | 20.43 | 3.65 | 2.49 | 0.0030115 | NAT | DOWN | ||
| lncRNA | 6.87 | 43.83 | −2.67 | 0.0056448 | ncRNA | UP | U | |
| BOLA3-AS1 | 34.96 | 9.42 | 1.89 | 0.0074620 | NAT | DOWN | ||
| ZNF503-AS2 | 21.89 | 4.65 | 2.24 | 0.0079046 | NAT | DOWN | ||
| ACVR2B-AS1 | 13.06 | 1.46 | 3.16 | 0.0095731 | NAT | DOWN | ||
| PRRT3-AS1 | 28.36 | 7.04 | 2.01 | 0.0095911 | NAT | DOWN | ||
| LINC00346 | 1.41 | 13.14 | −3.22 | 0.0121525 | lincRNA | UP | ||
| LINC00086 | 11.86 | 1.76 | 2.76 | 0.0132691 | lincRNA | DOWN | ||
| RUNX1-IT1 | 2.57 | 30.23 | −3.56 | 0.0136106 | ncRNA | UP | ||
| THAP7-AS1 | 29.29 | 8.11 | 1.85 | 0.0198907 | NAT | DOWN | ||
| ZNF503-AS1 | 11.56 | 1.93 | 2.58 | 0.0240067 | NAT | DOWN | ||
| RNF157-AS1 | 10.82 | 1.91 | 2.50 | 0.0245309 | NAT | DOWN | ||
| AFAP1-AS1 | 17.34 | 153.08 | −3.14 | 0.0265179 | NAT | UP | U [25] | |
| PSMG3-AS1 | 24.17 | 6.92 | 1.80 | 0.0291786 | NAT | DOWN | ||
| LINC00578 | 2.50 | 13.79 | −2.46 | 0.0404404 | lincRNA | UP | ||
| lncRNA | 2,303.62 | 721.52 | 1.67 | 0.0452843 | ncRNA | DOWN | D | |
| lncRNA | 964.77 | 471.70 | 1.03 | 0.0464071 | ncRNA | DOWN |
For each differentially expressed lncRNA (FDR < 0.05) the mean normalized expression values (NEV) for each group is provided together with the ratio between normal and PDAC expression in log2 scale (log2 FC). Furthermore, “Class” indicates the lncRNA type, “PED” the expression as provided by the pancreatic cancer expression database (U: Upregulated in PDAC, D: Downregulated in PDAC) and the last column presents information about the expression level of the RNA in other types of cancer.