Table 1.
PG2 versus vehicle | |||
---|---|---|---|
PG2-6J1 | PG2-6J2 | PG2-9J1 | |
Number of PG2 microarray | 4 | 4 | 3 |
probe sets | |||
t-test | |||
Upregulated | 284 | 533 | 332 |
Downregulated | 122 | 369 | 227 |
Total number of probe sets | 406 | 902 | 559 |
Excluded multiple or no gene symbol | 307 | 666 | 418 |
1,154 | |||
Limma | |||
Total number of probe sets | 388 | 1836 | 1272 |
Excluded multiple or no gene symbol | 297 | 1272 | 936 |
2,008 | |||
Gene | |||
Limma | |||
Gene symbols | 158 | 617 | 484 |
991 | |||
t-test | |||
Gene symbols | 290 | 638 | 404 |
1,111 | |||
Up: 646/Down: 465 | |||
Differentially expressed genes | Up: 27/Down: 5 | ||
k-clique gene symbols | Up: 65/Down: 22 | ||
3-clique: 27 4-clique: 10 |
Up: 44/Down: 17 |
A total of 11 PG2 microarrays were conducted in this study and divided into three product batches: 6J1, 6J2, and 9J1.