Table 2.
Haplotype phasing by SNP genotyping
| SNP | Reference | Distance (bp) a | 0124 | 0124 phased b | 0130 | 0130 phased b | 0163 | 0163 phased b |
|---|---|---|---|---|---|---|---|---|
| SNPs 5′ to deletion | ||||||||
| rs76768628 | A | 2408 | A/A | A | A/A | A | A/A | A |
| rs60905866 | G | 2250 | G/G | G | G/G | G | G/G | G |
| rs10463643 | C | 2150 | C/T | T | T/T | T | C/T | T |
| rs10051624 | G | 1781 | G/C | G | G/G | G | G/C | G |
| rs2900066 | A | 473 | A/T | T | T/T | T | A/T | T |
| rs6594643 | C | 275 | C/A | C | C/C | C | C/A | C |
| rs6594644 | T | 229 | T/G | T | T/T | T | T/G | T |
| SNPs 3′ to deletion | ||||||||
| rs4705559 | A | 4276 | A/G | A | A/A | A | A/G | A |
| rs7704618 | T | 4619 | T/G | T | T/T | T | T/G | T |
| rs1661035 | G | 5982 | G/C | C | C/C | C | G/C | C |
| rs76028897 | A | 6151 | A/A | A | A/A | A | A/A | A |
aDistance from the adjacent breakpoint coordinate of deletion chr5:112,034,826-112,045,845.
bSNP typing of phased PCR amplicons.
Positions which differ from the reference base are denoted in bold.