Table 3. SNPs varying between the parental strains A and B for filtered genes in the significant PNR1 QTL.
| Index | Symbol | SNP Count | ID | Mb | Domain | Function | Source | Strains | |
|---|---|---|---|---|---|---|---|---|---|
| A B | |||||||||
| 1 | Hif1a | 197 | wt37-12-75033404 | 75.033404 | Exon 6 | Synonymous/ protein coding | Sanger/UCLA | C | T |
| 2 | Prkch | 292 | wt37-12-74878483 | 74.878483 | Exon | 3’UTR | Sanger/UCLA | C | T |
| wt37-12-74878598 | 74.878598 | Exon | 3’UTR | Sanger/UCLA | T | G | |||
| 3 | Fntb | 150 | wt37-12-77988719 | 77.988719 | Exon 7 | Synonymous/ protein coding | Sanger/UCLA | T | C |
| wt37-12-78021734 | 78.021734 | Exon | 3’UTR | Sanger/UCLA | G | C | |||
| 4 | Dhrs7 | 4 | wt37-12-73751463 | 73.751463 | Exon | 3’UTR | Sanger/UCLA | T | C |
| rs29173979 | 73.754202 | Exon 5 | Synonymous/ protein coding | dbSNP | A | G | |||
| 5 | 1200003C05Rik | 6 | Intron | Non-splice site | Sanger/UCLA, dbSNP | ||||
| 6 | Ppm1a | 14 | Intron | Non-splice site | Sanger/UCLA, dbSNP | ||||
| 7 | Snapc1 | 34 | wt37-12-75070620 | 75.070620 | Intron | Splice site | Sanger/UCLA | C | T |
| wt37-12-75072923 | 75.072923 | Exon 6 | Non-synonymous/ protein coding | Sanger/UCLA | C | T | |||
| wt37-12-75073538 | 75.073538 | Exon 7 | Synonymous/ protein coding | Sanger/UCLA | A | T | |||
| wt37-12-75085002 | 75.085002 | Exon | 3’UTR | Sanger/UCLA | A | G | |||
| wt37-12-75085537 | 75.085537 | Exon | 3’UTR | Sanger/UCLA | A | G | |||
| 8 | Max | 6 | Intron | Non-splice site | Sanger/UCLA | ||||
| 9 | Mnat1 | 325 | wt37-12-74373930 | 74.373930 | Exon | 3’UTR | Sanger/UCLA | T | C |
| wt37-12-74374446 | 74.374446 | Exon | 3’UTR | Sanger/UCLA | G | A | |||
| wt37-12-74374838 | 74.374838 | Exon | 3’UTR | Sanger/UCLA | G | C | |||
| 10 | Daam1 | 326 | wt37-12-73091262 | 73.091262 | Exon | 3’UTR | Sanger/UCLA | A | T |
| wt37-12-73092065 | 73.092065 | Exon | 3’UTR | Sanger/UCLA | T | C | |||
| wt37-12-73092404 | 73.092404 | Exon | 3’UTR | Sanger/UCLA | G | T | |||
| wt37-12-73092739 | 73.092739 | Exon | 3’UTR | Sanger/UCLA | A | G | |||
| 11 | Rhoj | 6 | Intron | Non-splice site | Sanger/UCLA | ||||
| 12 | Sgpp1 | 4 | Intron | Non-splice site | Sanger/UCLA | ||||
| 13 | Syne2 | 24 | Intron | Non-splice site | Sanger/UCLA | ||||
| 14 | Esr2 | 8 | Intron | Non-splice site | Sanger/UCLA | ||||
| 15 | Akap5 | 0 | Intron | Non-splice site | Sanger/UCLA | ||||
| 16 | Gpx2 | 3 | Intron | Non-splice site | Sanger/UCLA | ||||
SNPs of potential significance are listed; the remaining are found in introns at non-splice sites.