Table 3.
Kyoto Encyclopedia of Genes and Genomes pathways with differentially expressed genes between the two groups
KEGG ID | Pathway name | Gene symbols | C | O | E | R | rawP | adjP |
---|---|---|---|---|---|---|---|---|
01100 | Metabolic pathways | Idi1, Ido2, Chkb, Cyp51, Nsdhl, Cyp2c54, Sds, Nans, Ces3b, Cyp7a1, Asns, Pnliprp1, Sc4 mol, Nnmt, Fdps, Cryl1, Sqle, Ggt6, Cyp2c38, Ces3a, Hsd3b5, Ccbl1, Agpat9, Bdh2, Ldhb, Acss3, Acmsd, Cyp2u1 | 1184 | 28 | 5.4 | 5.18 | 1.78E-12 | 1.16E-10 |
04630 | Jak-STAT signaling pathway | Lepr, Socs2, Irf9, Myc, Pim1, Ccnd1, Cish | 153 | 7 | 0.7 | 10 | 7.31E-06 | 9.50E-05 |
03320 | PPAR signaling pathway | Cyp7a1, Aqp7, Lpl, Cpt1b | 80 | 4 | 0.4 | 11 | 0.0005 | 0.0036 |
00590 | Arachidonic acid metabolism | Cyp2c54, Cyp2c38, Ggt6, Cyp2u1 | 90 | 4 | 0.4 | 9.74 | 0.0008 | 0.0047 |
00561 | Glycerolipid metabolism | Agpat9, Lpl, Pnliprp1 | 51 | 3 | 0.2 | 12.9 | 0.0017 | 0.0069 |
00564 | Glycerophospholipid metabolism | Agpat9, Chkb, Gpd2 | 80 | 3 | 0.4 | 8.22 | 0.006 | 0.015 |
01040 | Biosynthesis of unsaturated fatty acids | Acot4, Acot3 | 25 | 2 | 0.1 | 17.5 | 0.0058 | 0.015 |
04950 | Maturity onset diabetes of the young | Hhex, Hes1 | 26 | 2 | 0.1 | 16.9 | 0.0063 | 0.0152 |
04975 | Fat digestion and absorption | Pnliprp1, Apoa4 | 45 | 2 | 0.2 | 9.74 | 0.018 | 0.0355 |
00591 | Linoleic acid metabolism | Cyp2c54, Cyp2c38 | 46 | 2 | 0.2 | 9.53 | 0.0188 | 0.0359 |
00140 | Steroid hormone biosynthesis | Hsd3b5, Cyp7a1 | 55 | 2 | 0.3 | 7.97 | 0.0263 | 0.0442 |
Fold change >1.5, P < 0.05. adjP, P-value adjusted by the multiple test adjustment; C, the number of reference genes in the category; KEGG, Kyoto Encyclopedia of Genes and Genomes; O, the number of genes in the gene set and category; E, the expected number in the category; R, ratio of enrichment; rawP, P-value from hypergeometric test.