Skip to main content
. 2015 Apr 24;5:357–368. doi: 10.1016/j.fob.2015.04.012

Table 1.

Primer sets for quantitative PCR.

Gene Primer sequence Size (bp)
Ubiquitin–proteasome system
 Atrogin-1 (MAFbx) 5′-AGGAGCGCCATGGATACTGT-3′ (Forward) 161
5′-GAAGTTCTTTTGGGCGATGC-3′ (Reverse)
 MuRF1 (Trim63) 5′-ACCTGCTGGTGGAAAACATC-3′ (Forward) 96
5′-CTTCGTGTTCCTTGCACATC-3′ (Reverse)



Autophagy–lysosome system
 LC3b (Map1lc3b) 5′-CGATACAAGGGGGAGAAGCA-3′ (Forward) 185
5′-ACTTCGGAGATGGGAGTGGA-3′ (Reverse)
 p62 (Sqstm1) 5′-TGCTCTTCGGAAGTCAGCAA-3′ (Forward) 122
5-CCCGACTCCATCTGTTCCTC-3′ (Reverse)
 Lamp2 5′-TAGGAGCCGTTCAGTCCAAT-3′ (Forward) 158
5′-GTGTGTCGCCTTGTCAGGTA-3′ (Reverse)



Amino acid response
 Asns 5′-CTGTACGGATGAACCATTGC-3′ (Forward) 210
5′-GCCTCCTTGAGTTGCTTCA-3′ (Reverse)
 Trib3 5′-TCTTCCGGCAGATGGCTAGT-3′ (Forward) 123
5′-GGTTCTCCAGCACCAGCTTC-3′ (Reverse)
 Herpud1 5′-ATGGTGGTCCTCGAGATGCT-3′ (Forward) 139
5′-ATAAACGAGGGGCTGGTGTG-3′ (Reverse)
 xCT (Slc7a11) 5′-GTCATCGGATCAGGCATCTT-3′ (Forward) 124
5′-CATAGGACAGGGCTCCAAAA-3′ (Reverse)
 Chop (Ddit3) 5′-CATCCCCAGGAAACGAAGAG-3′ (Forward) 163
5′-TCTTCCTCCTGGGCCATAGA-3′ (Reverse)



Nrf2-mediated antioxidant system
 HO-1 5′-TGCTCGAATGAACACTCTGG-3′ (Forward) 206
5′-TCTCTGCAGGGGCAGTATCT-3′ (Reverse)
 Gsta1 5′-CCCCTTTCCCTCTGCTGAAG-3′ (Forward) 148
5′-TTCACTGAATCTTGAAAGCC-3′ (Reverse)



Amino acid transport
 Slc38a2 (Sat2) 5′-TCACCGTGACCATCTTGTCC-3′ (Forward) 166
5′-TGCACGGATCTCATTGGTTC-3′ (Reverse)
 Slc7a5 (Lat1) 5′-GCTTGTCTTGCTTCGGCTCT-3′ (Forward) 113
5′-CTGTGGGTGGATCATGGAGA-3′ (Reverse)
 Slc7a1 (Cat1) 5′-CTGGAGTGCGACTTTTGACG-3′ (Forward) 179
5′-TGTTGACCATGGCTGACTCC-3′ (Reverse)



Housekeeping gene (as a control)
 Hprt 5′-GACTGATTATGGACAGGACTG-3′ (Forward) 211
5′-GACTGATCATTACAGTAGCTC-3′ (Reverse)