TABLE 2.
Predicted DNA MTases in E. faecalis OG1RF
| MTase name | Locus ID | Annotationb | Function predicted by REBASE | Pfam hitc | REased |
|---|---|---|---|---|---|
| M.EfaRFI | OG1RF_11622 | bbviM DNA cytosine-5 MTase | Putative type II cytosine-5 DNA MTase, probably recognizes GCSGC | DNA methylase (1.8e−73) | R.EfaRFI (Pfam hit: RE_NgoFVII) |
| M.EfaRFII | OG1RF_11823 | MTase | Putative type II N4-cytosine or N6-adenine DNA MTase, probably recognizes CCWGG | Methyltransf_26 (2.7e−11) | R.EfaRFII (Pfam hit: HATPase_c_3) |
| M.EfaRFORF10790Pa | OG1RF_10790 | hpaIIM DNA cytosine-5 MTase | Putative type II cytosine-5 DNA MTase, unknown recognition sequence | DNA methylase (2.0e−87) |
a
This nomenclature is used in REBASE for putative R-M enzymes.
b
From the NCBI Gene database.
c
The expectation value is shown in parentheses.
d
Potential REases were predicted using REBASE.