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. 2004 Jul;14(7):1221–1231. doi: 10.1101/gr.2326704

Table 1.

Numbers of Ta-1 Inserts Collected and Fractions of Polymorphic Inserts

Cloning
Druze Biaka Chinese Melanesian Total Databasea Totalb
Clones collected 1344 1576 1851 1980 6751
Clones sequenced 613 156 253 234 1256
Number of different Ta-1 inserts 167 58 35 17 277 67 344
Flanking sequences located in database 142 52 26 12 232 67 299
Tested by PCR 116 28 21 9 174 43 217
% Polymorphic 52% 75% 71% 100% 60% 72% 62%
    Insertion sites occupied in database 102 19 13 4 138 67 205
Tested by PCR 86 14 12 2 114 43 157
% Polymorphic 38% 57% 50% 100% 43% 72% 51%
    Insertion sites empty in database 40 33 13 8 94 94
Tested by PCR 29 14 9 7 59 59
% Polymorphic 90% 93% 100% 100% 93% 93%
Flanking sequences not located in database 25 6 9 5 45 45
    Flanks are repeated DNA 17
    Flanks not present in db 28
Tested by PCRc 16 2 4 0 22 22
% Polymorphic 50% 0% 25% 41% 41%
a

Elements from the database that were missed by cloning but retrieved by a BLAST search.

b

Total number of Ta-1 inserts including cloning and database search.

c

The polymorphism of these elements was tested with a single PCR using only the flanking primer cognate to the 3′ flanking sequence of the inserts.