Table 3. Previously sequenced Prochlorococcus genomes included in the cyanobacterial clusters of orthologous groups of proteins (CyCOG) definitions.
| Name | Genome source | Clade | Assembly size (bp) | %GC | No. coding sequences* | NCBI accession | Sequence reference |
|---|---|---|---|---|---|---|---|
| *For the cultured isolate and metagenomic assembly genomes, this value represents the number of coding sequences as predicted in this study using the RAST pipeline; these values may differ from those previously published for this reason. Re-annotation data is included in this dataset (Data Citation 1 and Data Citation 2). | |||||||
| MED4 | Cultured isolate | HLI | 1,657,990 | 30.8 | 1,959 | BX548174 | 10 |
| MIT9515 | Cultured isolate | HLI | 1,704,176 | 30.8 | 1,951 | CP000552 | 4 |
| AS9601 | Cultured isolate | HLII | 1,669,886 | 31.3 | 1,944 | CP000551 | 4 |
| MIT9202 | Cultured isolate | HLII | 1,691,453 | 31.1 | 2,000 | DS999537 | 49 |
| MIT9215 | Cultured isolate | HLII | 1,738,790 | 31.1 | 2,035 | CP000825 | 4 |
| MIT9301 | Cultured isolate | HLII | 1,641,879 | 31.3 | 1,925 | CP000576 | 4 |
| MIT9312 | Cultured isolate | HLII | 1,709,204 | 31.2 | 1,982 | CP000111 | 16 |
| UH18301 | Cultured isolate | HLII | 1,654,648 | 31.2 | 1,947 | PRJNA47033 | 50 |
| W6 | Single cell amplified genome | HLII | 385,307 | 31.3 | 646 | ALPK00000000 | 12 |
| HNLC2 | Metagenomic assembly | HLIII | 1,484,494 | 30.3 | 1,701 | GL947595 | 14 |
| W3 | Single cell amplified genome | HLIII | 339,045 | 30.7 | 529 | ALPC00000000 | 12 |
| W5 | Single cell amplified genome | HLIII | 99,467 | 29.8 | 212 | ALPL00000000 | 12 |
| W7 | Single cell amplified genome | HLIII | 905,221 | 30.7 | 989 | ALPE00000000 | 12 |
| W8 | Single cell amplified genome | HLIII | 841,756 | 31.4 | 917 | ALPF00000000 | 12 |
| W9 | Single cell amplified genome | HLIII | 420,150 | 30.7 | 638 | ALPG00000000 | 12 |
| HNLC1 | Metagenomic assembly | HLIV | 1,569,623 | 29.8 | 1,830 | GL947594 | 14 |
| W10 | Single cell amplified genome | HLIV | 561,998 | 30.8 | 892 | ALPH00000000 | 12 |
| W11 | Single cell amplified genome | HLIV | 766,829 | 30.6 | 929 | ALPI00000000 | 12 |
| W12 | Single cell amplified genome | HLIV | 423,437 | 29.6 | 602 | ALPJ00000000 | 12 |
| W2 | Single cell amplified genome | HLIV | 1,266,767 | 30.5 | 1,374 | ALPB00000000 | 12 |
| W4 | Single cell amplified genome | HLIV | 765,485 | 29.9 | 819 | ALPD00000000 | 12 |
| NATL1A | Cultured isolate | LLI | 1,864,731 | 35.0 | 2,242 | CP000553 | 4 |
| NATL2A | Cultured isolate | LLI | 1,842,899 | 35.1 | 2,194 | CP000095 | 4 |
| MIT9211 | Cultured isolate | LLII,III | 1,688,963 | 38.0 | 1,943 | CP000878 | 4 |
| SS120 | Cultured isolate | LLII,III | 1,751,080 | 36.4 | 1,973 | AE017126 | 17 |
| MIT9303 | Cultured isolate | LLIV | 2,682,675 | 50.0 | 3,253 | CP000554 | 4 |
| MIT9313 | Cultured isolate | LLIV | 2,410,873 | 50.7 | 2,993 | BX548175 | 10 |