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. 2015 May 6;10(5):e0124334. doi: 10.1371/journal.pone.0124334

Table 2. Results of GLMMs (model fit by maximum likelihood, Laplace approximation) containing pair-wise contrasts for the main plant species (standardized absolute cover, see Methods) of the vegetated area at each study site.

Response variable Contrast effects Estimate SE t value p
A. chamissonis Be-Rv 0.0210 0.0157 1.34 0.185
Be-Sw -0.0168 0.0157 -1.068 0.288
Rv-Sw -0.0378 0.016 -2.404 <0.05
Time 0.0042 0.003 1.70 0.093
Transect (random effects): var = 5.2e-4, SD = 0.023
full model: Ambrosia~Site+Time+(1|Transect), family = gaussian; AIC = 241.35
M. chamomilla Be-Rv -0.0131 0.0022 -5.853 <0.001
Be-Sw -0.0126 0.0022 -5.623 <0.001
Rv-Sw 0.0005 0.0022 0.231 0.818
Time -0.0002 0.0003 -0.518 0.602
Transect (random effects): var = 7.2e-6, SD = 0.003
full model: Matricaria~Site+Time+(1|Transect), family = gaussian; AIC = -686.2
R. maricola Be-Rv -0.0110 0.0035 -3.12 <0.01
Be-Sw -0.0090 0.0035 -2.55 < 0.01
Rv-Sw 0.0000 0.0006 0 1
Time 0.0004 0.0006 0.741 0.460
Transect (random effects): var = 0, SD = 0
full model: Rumex~Site+Time+(1|Transect), family = gaussian; AIC = -593.44
Atriplex spp. Be-Rv -0.028 0.008 -3.582 <0.001
Be-Sw -0.007 0.0077 -0.904 0.368
Rv-Sw 0.0206 0.0077 2.678 <0.01
Be*Ti—Rv*Ti 0.0037 0.0014 2.72 <0.001
Be*Ti—Sw*Ti 0.0014 0.0014 1.028 0.306
Rv*Ti—Sw*Ti -0.0023217 0.00137 -1.694 0.0933
Transect (random effects): var = 4.7e-6, SD = 0.002
full model: Atriplex~Site*Time+(1|Transect), family = gaussian; AIC = -589.01
S. americanus Be-Rv 0.0129 0.0052 2.496 <0.05
Be-Sw 0.0130 0.0051 2.52 < 0.05
Rv-Sw 0.000 0.005 -0.02 0.982
Be*Ti—Rv*Ti -0.0042771 0.0009 4.65 <0.001
Be*Ti—Sw*Ti -0.0043 0.001 -4.73 <0.001
Rv*Ti—Sw*Ti 0.0001 0.0009 0.076 0.940
Transect (random effects):var = 6.6e-7, SD = 0.001
full model: Scoenoplectus~Site*Time+(1|Transect), family = gaussian; AIC = -676.16
Hordeum spp. Be-Rv 0.0022 0.0013 1.68 0.0968
Be-Sw 0.0022 0.0013 1.68 0.097
Rv-Sw 0.0000 0.001 0 1
Be*Ti—Rv*Ti -0.0008 0.0002 -3.49 <0.001
Be*Ti—Sw*Ti -0.0008 0.0002 -3.49 <0.001
Rv*Ti—Sw*Ti 0.0000 0.0002 0 1
Transect (random effects): var = 0, SD = 0
full model: Hordeum~Site*Time+(1|Transect), family = gaussian; AIC = -976

Models included site (B: unarmoured beach, Rv: revetment and Sw: seawall) as a fixed factor, time (9 dates) as a covariate, and random effects were associated with transects as a grouping factor. The best fitted full model is indicated per response variable. SE: standard error; var: variance; SD: standard deviation; AIC: Akaike’s information criterion. Significant effects appear in bold.