Table 1.
Gene | Promoter species | Transcription factor overexpressed or factors added | Response element | Sequence | Position | Functional assays |
---|---|---|---|---|---|---|
TNC | Chicken 24 | −3986 to + 121 | 3986bp more active than 721bp promoter in chicken embryo fibroblasts. 3986bp promoter active in human U251MG cells, but not in HT1080 cells. | |||
Chicken 36 | EVX1 (mouse) | TRE/AP1 | CTGAGTCAT | −281 to −273 | Reporter activation in NIH3T3 cells and inactivation by mutation of response elements. | |
Chicken 36 | HBS 1 | TAATGATGAT | −1354 to −1345 | In vitro binding assay with ftz homeodomain. | ||
HBS 2 | TAATGATTCT | −1369 to −1360 | ||||
Chicken 63 | AP1 | CTGAGTCAT | −281 to −273 | Reporter activation in chicken embryo fibroblasts; deletion of response element. | ||
ECM | −570 to −469 | Reporter activation on attached but not floating collagen gels; transfer of response to SV40 promoter | ||||
Mouse 23 | −247 to + 147 | 247bp promoter construct was more active than longer constructs in NIH3T3 and chicken fibroblasts | ||||
Mouse 39 | POU3F2 (BRN2) | octamer | ATGCAATG | −201 to −193 | Reporter activation in mouse mouse N2A cells, but not in rat C6 cells. Binding assays (EMSA, footprint). | |
NF1 | TGGCGGCGCGCCT | −187 to −165 | Inactivation of reporter activity by mutation of response element in N2A, C6 and NIH3T3 cells. | |||
EGR1 (KROX-24) | KROX20/24 | GCGGGGGCG | −256 to −248 | In vitro binding assays. Presence of element represses reporter in N2A cells, but not in NIH3T3 or C6 cells. | ||
Mouse 42,43 | PRRX1 (PRX1) | HBS | CATTAC | −57 to −52 | Reporter activation in rat A10 vascular SMCs and RFL-6 lung fibroblasts, EMSA and supershift. | |
Mouse 58 | MKL1 | SRE (CArG) | CTATTTATGG | −1414 to −1423 | SRF-dependent reporter activation in NIH3T3 cells and inactivation by mutation of response elements. | |
MKL1mutB1 | −247 to + 147 | SRF-independent SAP domain dependent promoter activation by cyclic strain; ChIP | ||||
Mouse 59 | MKL1 MKL1mutB1 |
−247 to + 147 | SRF-independent SAP domain dependent promoter activation in HC11 mammary epithelial cells Transcipts induced in SOX4-transfected LNCaP cells. |
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Human 86 | SOX4 | |||||
Human 20 | −220 to +79 | 220bp promoter more active than longer constructs in SK-Mel-28 and InR1-G9 cells. Positive effect of first 20bp of first exon; inclusion of 1338bp of the first intron in the long promoter construct activates the reporter in SK-Mel-28, but not InR1-G9 cells. | ||||
Human 37 | OTX2 | OTS | TAATCC | −530 to −525 | In vitro binding assays. | |
Human 38 | OTX2 | OTS | TCTAATCCC | −531 to −523 | Reporter repression in U87-MG human glioblastoma cells; EMSA and binding studies. | |
Human 78 | TGF-β and SMAD3 and 4ETS1 | CAGA1CAGA2EBS1 | TCTGGCAGAGTTCC | −66 to −62−43 to −39−121 to −118 | Reporter activation in human dermal fibroblasts in a complex with CBP-300; mutation of response elements; DNA affinity precipitation; Co-IP`s of complexes. | |
EBS4 | GGAA | −39 to −36 | ||||
SP1 | SBS2 | GGC | −60 to −58 | |||
SBS3 | GGA | −39 to −37 | ||||
TNC | Human 79 | PDGF and ETS1,2 and SP1 | EBS1EBS3EBS4SBS2 | TTCCGGAAAGGATGGAAGGC | −121 to −118−76 to −68−39 to −36−60 to −58 | Reporter activation in human dermal fibroblasts after PDGF stimulation; mutation of response elements; overexpression of dominant negative TFs; Co-IP`s of complexes |
SBS3 | GGA | −39 to −37 | ||||
PDGF and FLI1 | SBS2SBS3 | GGCGGA | −60 to −58−39 to −37 | Abrogation of PDGF-induced reporter expression in human dermal fibroblasts | ||
Human 84 | EWS-FLI; EWS-ERG (EWS-ETS) | EBS1–4 | GGAA | −130 to −30 | Reporter activation in H1299 cells. Endogenous transcripts induced by EWS-ETS, but not FLI or ERG | |
Human 85 | JUNRELA (p65) | GCN4NFkB | TGAGTGGGGAATTCCT | −149 to −144−214 to −207 | Synergistic reporter activation; mutation of response elements EMSA; transcripts induced by Jun overexpression in rat embryo fibroblasts. | |
Human 92 | NOTCH2 | RBPJk | GTGGGAA | −79 to −73 | Reporter activation in Hs683 cells and inactivation by mutation of response element, or mutation of NOTCH2. | |
Human 83 | GATA6 | TTATCC | −467 to −462 | Reporter repression in human dermal fibroblasts (both basal and IL-4 or TGF-β induced); mutation of binding element; ChIP | ||
Human 62 | NFKBIA (IkBα); IKBKB (IKK-β) | NFkB | GGGAATTCCT | −214 to −207 | Deletion of binding element inhibits promoter activation; EMSA; Overexpression of dominant negative regulators of NFkB inhibit strain-induced promoter activation in neonatal rat cardiac myocytes. | |
TNR | Mouse 101 | −167 to +435 | 167bp promoter was sufficient for full activity of reporter expression in cell lines of neural or glial origin but not in NIH3T3 and P19 teratocarcinoma cells. | |||
Human 99 | −57 to +40 | 57bp promoter was sufficient for full activity of reporter expression in cell lines of neural or glial origin but not in SK-MEL28 and HeLa cells. | ||||
TNXB | Mouse 124 | −150 to +333 | More active than longer or shorter constructs in mouse L and human 293Tcells | |||
SP1 | GGGAGG | −145 to −150 | Mutation of binding element reduces reporter activity; EMSA and supershifts. | |||
Human 121 | −181 to +88 | Higher activity in HT1080 cells than longer or shorter constructs; TSS in HT1080 cells and fibroblasts at +46bp. | ||||
SP1, SP3 | SP1/3 | GGG…GGG…GGG…GGG…CCC | −33 to −76 | Activation of 311bp and 181bp reporter constructs in Drosophila S9 cells. Mutation of binding sites inhibits promoter activity; EMSA and supershifts. |