Table 1. Candidate SNP in the SHGC critical mapping region of bovine chromosome 13.
| POS | REF | ALT | Gene | Description | Consequence | Amino-acid substitution |
|---|---|---|---|---|---|---|
| 63329680 | T | C | ENSBTAG00000031361 | Uncharacterized protein | Nonsynonymous coding | Tyr/His |
| 63346834 | A | G | ENSBTAG00000031354 | Uncharacterized protein | Nonsynonymous coding | Ile/Val |
| 63346948 | G | A | ENSBTAG00000031354 | Uncharacterized protein | Nonsynonymous coding | Val/Ile |
| 63351273 | C | G | ENSBTAG00000031354 | Uncharacterized protein | Nonsynonymous coding | Leu/Val |
| 63398648 | A | C | ENSBTAG00000018535 | CDK5 regulatory subunit-associated protein 1 | Nonsynonymous coding | Leu/Arg |
| 63758326 | G | T | ENSBTAG00000039313 | ZNF341 protein | Nonsynonymous coding | Ala/Ser |
| 63772681 | G | A | ENSBTAG00000039313 | ZNF341 protein | Nonsynonymous coding | Gly/Ser |
| 65369074 | C | T | ENSBTAG00000006021 | centrosomal protein 250kDa | Stop gained | Gln/Ter |
SHGC, Caprine-like Generalized Hypoplasia Syndrome; SNP, single-nucleotide polymorphism.
Position (POS) in base pairs of candidate nucleotide polymorphisms (reference allele REF and alternative allele ALT) are indicated, as well as the deduced amino acid resulting substitutions.