Table 1. Identification of putative ASJ-motif sequences in the promoters of all C. elegans genes reported to be expressed in ASJ neurons.
| Gene | Promoter region analyzed (bp) | Motif | Strand | Position relative to ATG | Position P-value | E-value |
|---|---|---|---|---|---|---|
| trx-1 | 200 | CAACCCATGAATTAA | + | −189 | 9.1E-08 | 0.0013 |
| ssu-1 | 334 | CTAACCATCAATTAG | + | −221 | 1.3E-06 | 0.056 |
| sptf-1 | 1003 | CAACCCTGTAATTTA | + | −868 | 8.5E-07 | 0.12 |
| dyf-3 | 650 | CAAATCTGGAATTTT | − | −81 | 4.6E-06 | 0.41 |
| cog-1 | 2000 | CAAATCGGCAATTTG | + | −1487 | 4.0E-06 | 0.48 |
| AAAACCGGCAATTTG | + | −1431 | 5.9E-05 | |||
| CAAACCGGCAATTTG | + | −1387 | 1.7E-06 | |||
| daf-25 | 2000 | CAAACCGGCAATTTG | − | −1172 | 1.7E-06 | 0.48 |
| CAAATCGGTAATTGC | + | −986 | 3.2E-05 | |||
| osm-9 | 1600 | CAACTCTTTAATTTT | + | −37 | 4.0E-06 | 0.89 |
| mks-5 | 3946 | CAAACCGGCAAATTG | − | −3711 | 4.5E-05 | 0.94 |
| CAAACCGGCAATTTG | − | −3667 | 1.7E-06 | |||
| CAAATCGGCAATTTG | + | −3379 | 4.0E-06 | |||
| CAACACGGGAATTGT | − | −1224 | 4.9E-05 | |||
| C39D10.5 | 1005 | GAAACCGTTAATTAA | − | −240 | 7.4E-06 | 1 |
| srh-10 | 1005 | CAACCCGCCATTTAT | − | −861 | 1.7E-05 | 2.3 |
| ceh-13 | 1051 | CGAACCCCCAATCGA | − | −866 | 1.8E-05 | 2.6 |
| R102.2 | 700 | CTAAGCTTCAATTAA | + | −123 | 4.3E-05 | 4 |
| odr-8 | 1005 | CAACTCATTGATTGA | + | −483 | 3.6E-05 | 4.8 |
| ttx-7 | 524 | CAAATCACCATTTGT | − | −436 | 7.7E-05 | 5.3 |
| ins-6 | 1714 | AAACCCAGCAATTGA | − | −229 | 2.5E-05 | 5.7 |
| K07C11.10 | 2289 | TGACCCTCCAATTGG | + | −1958 | 5.9E-05 | 5.8 |
| CAATTCGCTAATTAG | + | −49 | 1.9E-05 | |||
| age1 | 900 | CAACTCCTCAATTCT | + | −494 | 6.3E-05 | 7.4 |
| ins-4 | 5716 | CTTATCCCTAATTGT | − | −4813 | 9.5E-05 | 8 |
| CAACACAGGAATTAA | − | −371 | 1.1E-05 | |||
| ins-3 | 5728 | CAACACAGGAATTAA | + | −5314 | 1.1E-05 | 8 |
| CTTATCCCTAATTGT | + | −871 | 9.5E-05 | |||
| tbx-2 | 1006 | CGAATCAGTAATAAG | + | −790 | 6.3E-05 | 8.2 |
| tub-1 | 2800 | GAAATCATCAATTAT | − | −2566 | 8.3E-05 | 10 |
| CGAACCTGGAATCAA | − | −2468 | 2.9E-05 | |||
| TAAATCTCTAATTAT | + | −1062 | 6.9E-05 | |||
| pnc-1 | 1001 | AAAACCTGCAATTTT | + | −340 | 8.5E-05 | 11 |
| K10D6.2 | 3450 | AAAACCCTTAATTGT | + | −3161 | 3.5E-05 | 11 |
| CTAACCTCGATTTTA | − | −2867 | 5.3E-05 | |||
| CGAACTTCTAATTAG | + | −1379 | 2.5E-05 | |||
| CAAATCGTTCATTTG | + | −931 | 7.7E-05 | |||
| dyf-2 | 3000 | ATAATCCTGAATTAA | + | −1920 | 8.9E-05 | 11 |
| CAAACCGGGAATGAT | + | −235 | 2.9E-05 | |||
| unc-103 | 5000 | CAAACAATGAATTGA | + | −4855 | 2.0E-05 | 13 |
| sra-39 | 2877 | CAAATTGTGAATTAA | + | −624 | 5.6E-05 | 19 |
| nphp-1 | 4820 | GGAATCACTAATTAA | − | −317 | 3.6E-05 | 21 |
| gpa-10 | 3000 | CGAACTCCGAATTTG | + | −1739 | 5.9E-05 | 21 |
| ins-1 | 4200 | CAAATATCTAATTAT | + | −2561 | 6.9E-05 | 23 |
| CAAAACTGCAATTAT | − | −1543 | 4.7E-05 | |||
| CTAATAATCAATTAA | − | −1266 | 8.3E-05 | |||
| add1 | 3100 | CAACTCATTATTTGT | + | −2288 | 6.9E-05 | 24 |
| nhr-67 | 5000 | CAAATCGACAATTAT | + | −2621 | 4.7E-05 | 26 |
| CTACCACTCAATTGA | + | −331 | 5.3E-05 | |||
| dyf-11 | 4101 | CAAATTCCCAATTTG | + | −2825 | 9.5E-05 | 36 |
| CAAATATGCAATTGA | + | −2597 | 9.5E-05 | |||
| CAATTCTTTAATTTT | − | −274 | 8.9E-05 | |||
| wrk-1 | 4642 | CAAATCATTTATTTT | + | −4469 | 8.3E-05 | 38 |
| gcy-27 | 1020 | 0 | 13 | |||
| K07C5.9 | 425 | 0 | 14 | |||
| arrd-4 | 1000 | 0 | 15 | |||
| gpa-1 | 1500 | 0 | 19 | |||
| npr-15 | 1010 | 0 | 20 | |||
| egap-5 | 1153 | 0 | 24 | |||
| daf-11 | 1020 | 0 | 25 | |||
| gpa-3 | 2000 | 0 | 26 | |||
| cng-2 | 2362 | 0 | 28 | |||
| ins-9 | 1100 | 0 | 29 | |||
| kin-29 | 830 | 0 | 34 | |||
| c34d4.1 | 1006 | 0 | 34 | |||
| odr-4 | 1026 | 0 | 35 | |||
| gpa-9 | 3000 | 0 | 35 | |||
| egl-43 | 1734 | 0 | 37 | |||
| tax-2 | 1982 | 0 | 40 | |||
| ncam-1 | 2069 | 0 | 41 | |||
| clhm-1 | 3000 | 0 | 42 | |||
| nlp-3 | 1024 | 0 | 42 | |||
| npr-5 | 1010 | 0 | 42 | |||
| nphp-4 | 4750 | 0 | 46 | |||
| F25B4.2 | 2875 | 0 | 47 | |||
| ins-32 | 454 | 0 | 47 | |||
| dpy-14 | 1006 | 0 | 48 | |||
| efn-2 | 2744 | 0 | 49 | |||
| arrd-17 | 1000 | 0 | 49 | |||
| Y55D5A.1 | 3419 | 0 | 54 | |||
| gpa-14 | 3000 | 0 | 56 | |||
| tax-4 | 1080 | 0 | 58 | |||
| sre-1 | 1006 | 0 | 61 | |||
| K10G6.4 | 2380 | 0 | 62 | |||
| c33A12.4 | 604 | 0 | 62 | |||
| tbb-4 | 3000 | 0 | 64 | |||
| gpc-1 | 4200 | 0 | 64 | |||
| jbts-14 | 3761 | 0 | 66 | |||
| itf-81 | 1457 | 0 | 67 | |||
| daf-28 | 3302 | 0 | 67 |
The E-value of a sequence is the expected number of sequences in a random database of the same size that would match the motifs as well as the sequence does.The position P-value of a match is the probability of a single random subsequence of the length of the motif scoring at least as well as the observed match. For each sequence, all motif occurrences with a position P-value <0.0001 are shown.