Skip to main content
. 2015 Mar 18;200(1):185–205. doi: 10.1534/genetics.115.175919

Table 5. Calculated relative abundance (percent of total histone H3) for H3 K79 methylation and H3 K56aca.

Yeast genetic backgroundb
hst3hst4∆ H3/H4 WT hst3hst4∆ H3/H4K16R hst3hst4∆ H3K79R/H4
(ASY2737) (ASY2745) (ASY2749)
H3K79Me0 ± SEMc,d 13.1 ± 0.4 10 ± 1 NA
H3K79Me1 ± SEMc,d 4.9 ± 0.1 8 ± 1 NA
H3K79Me2 ± SEMc,d 11.6 ± 0.4 26 ± 2 NA
H3K79Me3 ± SEMc,d 70.4 ± 0.1 56 ± 4 NA
H3K56Ac ± SEMc,e 80.3 ± 0.7 92.4 ± 0,5 88.3 ± 0.3

NA, not applicable.

a

The abundance of each peptide was assessed by mass spectrometry of total histone H3 purified from each strain in buffers containing a cocktail of deacetylase inhibitors (see Materials and Methods).

b

Strains ASY2737, ASY2745, and ASY2749 are in the same genetic background (see Table 1).

c

Standard error of the mean of two mass spectrometry technical replicates.

d

The values for the different forms of H3K79 reflect the relative abundance of a given isoform (e.g., H3K79me0) expressed as a percentage of the abundance of all H3K79 isoforms (K79me0+me1+me2+me3). For technical reasons, these values should not be equated stoichiometries. See Materials and Methods for a more detailed explanation.

e

The values for H3K56Ac reflect stoichiometries, i.e., the fraction of all H3 molecules that are K56 acetylated. This is expressed as percentages obtained as follows: abundance of K56Ac divided by abundance of K56Ac + K56Pr. See Materials and Methods for a more detailed explanation.