Table 5. Calculated relative abundance (percent of total histone H3) for H3 K79 methylation and H3 K56aca.
Yeast genetic backgroundb | |||
---|---|---|---|
hst3∆ hst4∆ H3/H4 WT | hst3∆ hst4∆ H3/H4K16R | hst3∆ hst4∆ H3K79R/H4 | |
(ASY2737) | (ASY2745) | (ASY2749) | |
H3K79Me0 ± SEMc,d | 13.1 ± 0.4 | 10 ± 1 | NA |
H3K79Me1 ± SEMc,d | 4.9 ± 0.1 | 8 ± 1 | NA |
H3K79Me2 ± SEMc,d | 11.6 ± 0.4 | 26 ± 2 | NA |
H3K79Me3 ± SEMc,d | 70.4 ± 0.1 | 56 ± 4 | NA |
H3K56Ac ± SEMc,e | 80.3 ± 0.7 | 92.4 ± 0,5 | 88.3 ± 0.3 |
NA, not applicable.
The abundance of each peptide was assessed by mass spectrometry of total histone H3 purified from each strain in buffers containing a cocktail of deacetylase inhibitors (see Materials and Methods).
Strains ASY2737, ASY2745, and ASY2749 are in the same genetic background (see Table 1).
Standard error of the mean of two mass spectrometry technical replicates.
The values for the different forms of H3K79 reflect the relative abundance of a given isoform (e.g., H3K79me0) expressed as a percentage of the abundance of all H3K79 isoforms (K79me0+me1+me2+me3). For technical reasons, these values should not be equated stoichiometries. See Materials and Methods for a more detailed explanation.
The values for H3K56Ac reflect stoichiometries, i.e., the fraction of all H3 molecules that are K56 acetylated. This is expressed as percentages obtained as follows: abundance of K56Ac divided by abundance of K56Ac + K56Pr. See Materials and Methods for a more detailed explanation.