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. 2015 Mar 17;200(1):343–355. doi: 10.1534/genetics.114.173898

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Copyright © 2015 by the Genetics Society of America

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Comparison of densities of coalescence times $t_{2}$ at the right locus conditioned upon coalescence times $t_{1}$ at the left locus. Conditional densities $f_{T_{2} | T_{1}} (t_{2} | t_{1})$ are shown for the ARG, SMC, and SMC′ models for three different rates of recombination between the two loci ( $ρ = 0.1, 1.0, 5.0$ ) and three different conditioned-upon coalescence times $t_{1}$ at the left locus ( $t_{1} = 0.1, 1.0, 4.0$ ). The area under each curve is $P (T_{2} \neq t_{1} | T_{1} = t_{1})$ ; the conditional probabilities $P (T_{2} = t_{1} | T_{1} = t_{1})$ are not shown.