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. 2015 May 7;5:10104. doi: 10.1038/srep10104

Effects of zinc transporters on Cryptococcus gattii virulence

Rafael de Oliveira Schneider 1, Camila Diehl 1, Francine Melise dos Santos 1, Alícia Corbellini Piffer 1, Ane Wichine Acosta Garcia 1, Marcos Iuri Roos Kulmann 1, Augusto Schrank 1,2, Lívia Kmetzsch 1,2, Marilene Henning Vainstein 1,2, Charley C Staats 1,2,a
PMCID: PMC4423424  PMID: 25951314

Abstract

Zinc is an essential nutrient for all living organisms because it is a co-factor of several important proteins. Furthermore, zinc may play an essential role in the infectiousness of microorganisms. Previously, we determined that functional zinc metabolism is associated with Cryptococcus gattii virulence. Here, we characterized the ZIP zinc transporters in this human pathogen. Transcriptional profiling revealed that zinc levels regulated the expression of the ZIP1, ZIP2 and ZIP3 genes, although only the C. gattii zinc transporter Zip1 was required for yeast growth under zinc-limiting conditions. To associate zinc uptake defects with virulence, the most studied cryptococcal virulence factors (i.e., capsule, melanin and growth at 37 °C) were assessed in ZIP mutant strains; however, no differences were detected in these classical virulence-associated traits among the mutant and WT strains. Interestingly, higher levels of reactive oxygen species were detected in the zip1Δ and in the zip1Δ zip2Δ double mutants. In line with these phenotypic alterations, the zip1Δ zip2Δ double mutant displayed attenuated virulence in a murine model of cryptococcosis. Together, these results indicate that adequate zinc uptake is necessary for cryptococcal fitness and virulence.

The basidiomycete yeasts Cryptococcus neoformans and Cryptococcus gattii are the etiological agents of cryptococcosis, a life-threatening disease that is generally characterized by meningoencephalitis. Cryptococcal infections are responsible for approximately 1 million cases of meningoencephalitis annually, resulting in approximately 625,000 deaths, principally in HIV-infected individuals1. Although C. neoformans infects mainly immunocompromised patients, C. gattii can cause disease in immunocompetent patients2,3. Recently, C. gattii has gained attention due to an outbreak that occurred in Canada and spread into the United States4.

A wide range of strategies is used by the immune system to control the proliferation of infectious agents. For example, macrophages and other phagocytes produce a harsh intracellular environment that is unfavorable for microbial development. This cellular compartment is characterized by extremely low pH and the presence of reactive nitrogen and oxygen species (ROS), enzymes and antimicrobial peptides5. Additionally, the host immune system can restrict the availability of essential metals in a process called nutritional immunity. One example is the restriction of iron availability, which is a well-characterized defense mechanism against infections6. However, nutritional immunity is not limited to iron withholding7. Zinc is an essential element for all organisms and is required for the functions of many proteins with catalytic and structural roles8. Recently, we demonstrated that the proper regulation of zinc metabolism is important for the virulence of the human pathogen C. gattii because the absence of the master zinc metabolism regulator Zap1 impaired the virulence of this pathogen9. Furthermore, an association between the regulation of zinc metabolism and virulence in pathogenic fungi was observed in Aspergillus fumigatus and Candida albicans, where the inactivation of Zap1 orthologs impaired the infection process10,11.

Fungal zinc homeostasis has been best characterized in the model organism Saccharomyces cerevisiae12,13, in which proteins of the ZIP family of zinc transporters take up this metal. ZIP zinc transporters are found in all life domains and were named based on the first identified members (Zrt1p from S. cerevisiae and IRT-like protein from Arabidopsis thaliana). While Zrt1p was characterized as a zinc transporter, IRT were able to transport iron14. Zinc metabolism is a potential target for the development of antifungal drugs because some fungal pathogens demonstrate greater sensitivity to deprivation of zinc than iron15. Moreover, recent work demonstrated that some drugs led to alterations in the expression of zinc homeostasis-related genes in S. cerevisiae16. Despite the importance of C. gattii as a pathogen, zinc metabolism is still poorly characterized in this fungus. Here, we describe the functional characterization of ZIP zinc transporters in C. gattii R265, their role in zinc metabolism and the effects of gene deletion on cryptococcal virulence.

Results

Identification of ZIP transporters in C. gattii

Analysis of the C. gattii predicted proteome17 for a PFAM domain ZIP zinc transporter (PF02535) revealed the presence of 4 four different genes. Previously, we showed that intracellular zinc levels altered the transcript levels of three genes (CNAG_6066 – ZIP1, CNBG_2209 – ZIP2, and CNBG_5361 – ZIP3)9. The fourth gene (CNBG_3633 (ZIP4)) is a direct ortholog of S. cerevisiae YKE4, whose product is a bidirectional zinc transporter located in the endoplasmic reticulum18. The number of predicted transmembrane domains in the C. gattii Zip proteins ranges from 5 to 9 (Figure S1A). We predicted that these proteins would be localized to the membranes of different subcellular compartments. In agreement with this prediction, analysis using the WoLF PSORT19 and SherLoc220 servers predicted that all C. gattii Zip proteins were located at the plasma membrane. Phylogenetic analysis employing characterized fungal zinc transporters from the ZIP family as well as the A. thaliana Irt1 iron transporter revealed that C. gattii Zip1 and Zip2 clustered with the high and low affinity zinc transporters S. cerevisiae Zrt1 and Zrt2, respectively (Figure S1B). C. gattii Zip4 was located in an independent cluster characterized by the presence of S. cerevisiae Yke4 while C. gattii Zip3 was not phylogenetically related to the ZIP transporters here analysed (Figure S1B).

Transcriptional profiling of the C. gattii ZIP1, ZIP2 and ZIP3 genes was conducted to evaluate the effects of extracellular zinc levels on ZIP family gene expression. Fungal cells were cultured under control conditions in the presence of an extracellular metal chelating agent (diethylene triamine pentaacetic acid - DTPA), under the Zn condition (DTPA supplemented with ZnCl2 or ZnCl2 without DTPA), and under the Fe condition (DTPA supplemented with FeCl3 or FeCl3 without DTPA). A significant increase in the transcript levels of all ZIP genes was detected when cells were cultured in the presence of DTPA (Fig. 1). In contrast, when zinc or iron was added to the culture medium, the transcript levels of all genes were not statistically distinct from those observed in the control condition (Fig. 1). Therefore, zinc and iron availability regulate the expression of the ZIP1, ZIP2 and ZIP3 genes.

Figure 1. ZIP transcript levels are regulated by metal levels.

Figure 1

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Quantitative real time RT-PCR of ZIP gene transcripts after growth of C. gattii in YNB, YNB supplemented with DTPA (100 μM), DTPA (100 μM) added of ZnCl2 (400 μM), DTPA (100 μM) added of FeCl3 (400 μM), ZnCl2 (400 μM) or and FeCl3 (400 μM). The measured quantity of the mRNA in each sample was normalized using the Ct values obtained for the ACT1 gene. Data is shown as the mean ± SD from three experimental replicates of three biological replicates. Means with the same letter are not significantly different, as analyzed by one-way ANOVA followed by Tukey multicomparison test.

C. gattii Zip1 is important for growth under zinc-limiting conditions

Functional analyses were conducted for the ZIP1 and ZIP2 genes because these genes are targets of the Zap1 transcriptional factor9 and are highly regulated by zinc levels. To evaluate the function of Zip1 and Zip2 in C. gattii, we constructed null mutants, complemented strains, and a double zip1Δ zip2Δ mutant strain. Knockout and complementation were confirmed by both Southern blotting and RT-PCR analysis (Figure S2). To evaluate the role of C. gattii Zip1 and Zip2 in zinc homeostasis, the sensitivity of the constructed strains to zinc-limiting conditions was evaluated (YNB containing DTPA). Metal deprivation resulted in decreased growth of the zip1Δ null mutant and the zip1Δ zip2Δ double mutant strains (Fig. 2A). This growth reduction in the zip1Δ and in the zip1Δ zip2Δ mutants was recovered when a zinc source was added to the medium containing DTPA (Fig. 2A) or, in the case of zip1Δ null mutant, by reintroducing the WT locus into the mutant strain. As DTPA is a broad metal chelator, assays employing iron supplementation were conducted to evaluate if the reversal of zip1Δ and the zip1Δ zip2Δ double mutants growth defect was limited to zinc. Only a partial growth recovery of the zip1Δ and of the zip1Δ zip2Δ mutants was observed when iron was added to DTPA media. Similar results were found for copper and manganese (data not shown). As predicted from the bioinformatic analysis, these results indicate that Zip1 plays an important role in zinc uptake.

Figure 2. The C. gattii zip1Δ and zip1Δ zip2Δ double mutants are deficient in zinc uptake.

Figure 2

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A Growth measurement of the WT, zip1Δ, zip1Δ::ZIP1, zip2Δ, zip2Δ::ZIP2 and zip1Δ zip2Δ strains after 48 h of incubation in YNB and YNB supplemented with 100 μM DTPA with and without 100 μM ZnCl2 (left panel) or YNB supplemented with 100 μM DTPA with and without 100 μM FeCl3 (right panel). Data is shown as the mean ± SD from three biological replicates. For each group, means with the same letter are not significantly different, as analyzed by one-way ANOVA followed by Tukey multicomparison test. B Dithizone spot plate assay of C. gattii strains grown on YNB with or without 400 μM ZnCl2 or YNB supplemented with 100 μM DTPA with or without 400 μM ZnCl2.

To further confirm the hypothesis that Zip1 participates in zinc uptake, we evaluated zinc concentrations in cryptococcal cells. The utilization of the intracellular zinc indicator dithizone generates an intense reddish stain in colonies in the presence of zinc when appropriate intracellular zinc levels are obtained21. All strains were incubated on YNB agar plates in the presence of DTPA, DTPA plus zinc or zinc alone. After 18 h of incubation, colonies were transferred to agar plates containing dithizone. The colonies from all strains grown in YNB stained red, with exception of those from the zip1Δ mutant and the zip1Δ zip2Δ double mutant (Fig. 2B). As expected, colonies from all strains grown in the presence of DTPA did not stain with dithizone, and growth in the presence of zinc (with or without DTPA) led to dithizone red staining (Fig. 2B). Requirements for growth during zinc deprivation were also assessed at alkaline pH because the phylogenetic analysis revealed that C. gattii Zip2 clustered with A. fumigatus ZrfC, which is required for zinc uptake at alkaline pH22. As a control, the same analysis was evaluated at pH 5. All of the strains analyzed grew equally well in YNB media, YNB buffered to pH 5 and YNB buffered to pH 8. However, in the presence of the zinc chelator DTPA, only the zip1Δ mutant displayed reduced growth (Figure S3). Altogether, these results confirm that Zip1 plays an important role in cryptococcal zinc uptake.

Compensatory effects on zinc metabolism in the functional mutant ZIP2

Despite a possible role for ZIP2 in zinc uptake due to its predicted plasma membrane location, the zip2Δ mutant displayed normal growth under zinc-limiting conditions, and its intracellular zinc levels were comparable to the WT strain (Figs. 2A,B). Although ZIP2 showed the highest expression fold change among the ZIP genes in the presence of DTPA (Fig. 1C), its transcript levels under zinc-deprivation conditions were lower than those of ZIP1 (FPKM values of 10,930.9 for ZIP1 and 737.7 for ZIP2 as assessed from transcriptome analysis of the WT strain grown for 2 h in YNB supplemented with the zinc chelator TPEN9). These data suggest that Zip1 is the more abundant canonical zinc transporter in C. gattii under such conditions. To evaluate whether the lack of ZIP2 caused a compensatory effect resulting in the upregulation of ZIP1, qRT-PCR analysis was performed to compare the transcript levels of the ZIP1 gene in WT and zip2Δ mutant strains grown in control (YNB) or in metal limiting conditions (YNB + DTPA). For both strains, an increase in transcript levels of the ZIP1 gene was observed in the presence of DTPA, but the relative increase was higher for the zip2Δ mutant (nearly 100-fold) when compared to the fold change in WT cells (nearly 50-fold - Fig. 3A). In contrast, an increase in the transcript levels of the ZIP3 gene was only detected in WT cells (Fig. 3B). These data imply a compensatory effect due to the overexpression of ZIP1 in the absence of ZIP2.

Figure 3. ZIP1 is overexpressed when ZIP2 is not functional.

Figure 3

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Quantitative real-time RT-PCR of ZIP1 and ZIP3 gene transcripts after growth of WT or zip2Δ mutant cells under control (YNB) and low metal conditions (100 μM DTPA). The measured quantity of the mRNA in each sample was normalized using the Ct values obtained for the ACT1 gene. Data are shown as the mean ± SD from three experimental replicates of three biological replicates. The asterisks denote statistically significant differences compared to the WT levels (* P < 0.05. ** P < 0.01. *** P < 0.001).

An imbalance in zinc homeostasis causes an increase in levels of reactive oxygen species

We hypothesized that the zip1Δ and zip1Δ zip2Δ mutant strains could induce the accumulation of intracellular ROS levels because such cells displayed reduced intracellular zinc levels. To test this hypothesis, the WT, zip1Δ mutant, zip2Δ mutant, and zip1Δ zip2Δ double mutant strains were incubated for 2 h in medium containing DTPA and DTPA added of ZnCl2 and treated with the intracellular ROS probe H2DCFDA, followed by fluorometric analysis. We did not detect differences in ROS levels in cells lacking the ZIP2 gene compared to WT from DTPA cultures. However, an important increase in ROS levels was detected in the zip1Δ and in zip1Δ zip2Δ mutant strains (Fig. 4). This increase of ROS in cells lacking ZIP1 or in cells lacking both ZIP1 and ZIP2 is somewhat relived when zinc was added to the culture (Fig. 4). These results suggest that zinc uptake by at least Zip1 is necessary to provide zinc to cells to maintain proper ROS homeostasis, however the function of Zip2 in zinc uptake could also be considered.

Figure 4. Lack of both ZIP1 and ZIP2 cause an imbalance in ROS metabolism. Determination of intracellular ROS levels using the probe CM-H2DCFDA.

Figure 4

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ROS levels were determined based on fluorometry analyses of green fluorescence. WT, zip1Δ mutant, zip2Δ mutant and zip1Δ zip2Δ double mutant strains were cultured for 2 h in YNB with DTPA (100 μM) added or not of ZnCl2 (400 μM). The bars represent the cell count normalized fluorescence intensity of three independent biological replicates. Data is shown as the mean ± SD from three biological replicates. Means with the same letter are not significantly different, as analyzed by one-way ANOVA followed by Tukey multicomparison test.

It is noteworthy that none of the strains analyzed herein showed hypersensitivity to the ROS generating agent hydrogen peroxide or to the glutathione-depleting compound diethyl malate (data not shown). Zinc deficiency generates an increase in oxidative stress in S. cerevisiae cells; in these cells, the adaptive response necessary to overcome the damage caused by ROS is mediated by the Zap1p transcription regulator23. Our experimental data in C. gattii also showed that the acquisition of zinc from the extracellular milieu was important for ROS homeostasis.

Zip1 and Zip2 are necessary for cryptococcal virulence

To evaluate whether zinc transport plays a role in C. gattii virulence, we evaluated the levels of the most studied cryptococcal virulence factors in all strains24. However, we did not detect any differences in fungal growth at 37 °C, melanization or capsule formation (data not shown). The first step in the pathology of Cryptococcus is the interaction between the yeast cells and macrophages25. Therefore, it is important to evaluate whether cryptococcal strains lacking the zinc transporter react differently with macrophages. Interaction assays using the generated mutants were performed employing the J774.1 cell line. C. gattii cells were labeled with fluorescein isothiocyanate (FITC), and the phagocytosis index was assessed by flow cytometry analysis after 2 h of interaction. We employed an assay in which the index of fluorescence for each macrophage detected with flow cytometry was proportional to the uptake of yeast cells. A higher number of the zip1Δ and zip1Δ zip2Δ mutant strains were internalized by macrophages compared to the WT strain (Fig. 5A). In addition, the capability of C. gattii to survive and replicate inside macrophages was affected in the zip2Δ and zip1Δ zip2Δ mutant strains (Fig. 5B) based on the recovery of a lower number of CFUs from the infected macrophages. It is noteworthy that uptake of the zip2Δ mutant strain from macrophages was statistically comparable to WT levels, despite a tendency for higher fungal loads in macrophages (Fig. 5A). Considering that the zip2Δ mutant exhibited hypersensitivity to macrophages, we propose that Zip2 plays an important role in cryptococcal survival inside macrophages. To further validate the role of the Zip proteins in cryptococcal virulence, we used an intranasal murine model of cryptococcosis. We found enhanced survival only in mice infected with the zip1Δ zip2Δ strain compared to mice infected with the WT strain (Fig. 5C), despite the hypersensitivity of C. gattii strains lacking ZIP2 to macrophages. Together, these results confirm the importance of proper zinc uptake to cryptococcal virulence.

Figure 5. Inactivation of zinc uptake impairs cryptococcal virulence.

Figure 5

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A Flow cytometry analysis of J774.A1 macrophage infection after 2 h of interaction with FITC-labeled C. gattii cells. B Survival index estimated using the ratio between the CFU following 24 h of interaction and the fluorescence units obtained by flow cytometry following 2 h of interaction. C A virulence assay of WT, zip mutants, complemented strains and the zip1Δ zip2Δ double mutant strain in a murine intranasal inhalation infection model.

Discussion

Transition metals are required for all living organisms. However, the catalytic activity mediated by transition metals can produce a toxic environment, and the levels of these micronutrients must be tightly controlled26,27. Among transition metals, zinc is used as a cofactor by a large number of proteins8,28. The complex regulatory mechanism used to acquire and distribute zinc inside fungal cells has been characterized23. This system relies on the activity of a group of proteins responsible for zinc transport and redistribution inside the cells, being the best characterized the ZIP and the ZnT family of metal ion transporters29. Here, we describe four genes in the C. gattii genome that encode the ZIP family of zinc transporters (ZIP1, ZIP2, ZIP3 and ZIP4), two of which we functionally characterized. The number of zinc transporters from the ZIP family in fungal species ranges from 4 in S. cerevisiae29 to 8 in A. fumigatus30. These proteins show different predicted localization and biochemical properties, as exemplified by the high and low specificity of the Zrt1p and Zrt2p proteins from S. cerevisiae, respectively31,32. Here, we further expanded the knowledge of the role of the ZIP genes in Cryptococcus. Four lines of evidence presented here support that Zip1 is the main zinc transporter in C. gattii: (i) its close phylogenetic relationship with S. cerevisiae Zrt1p; (ii) the corresponding ZIP1 transcript levels are highly modulated by zinc availability; (iii) C. gattii null mutants of the ZIP1 gene are hypersensitive to zinc deprivation; and (iv) the deletion of ZIP1 led to reduced intracellular zinc levels. These same phenotypes and characteristics were not associated with cryptococcal protein Zip2, suggesting that Zip1 is the main ZIP family member responsible for zinc acquisition in C. gattii cells. S. cerevisiae Zrt1p is a high affinity zinc uptake system; zrt1 mutation eliminated the high affinity activity and led to poor growth under zinc-limiting conditions31. Additionally, S. cerevisiae Zrt2p is a non-essential gene required for the low affinity zinc uptake system. Notably, the zrt1 zrt2 double mutant strain is viable33. Although C. gattii Zip1 was found to be fundamental for zinc uptake, Zip2 appears to play a marginal role. Phylogenetic analysis revealed that C. gattii Zip2 clustered with A. fumigatus ZrfC, a ZIP family transporter involved in zinc uptake in alkaline environments22. Zip2 in both fungi was predicted to be localized to the plasma membrane22,31. Even in the absence of ZIP2, cryptococcal cells were able to grow under zinc deprivation. This may be a consequence of a compensatory effect due to the upregulation of Zip1 in the zip2Δ mutant. In accordance, we previously showed that both ZIP1 and ZIP2 are under the regulation of the transcription factor Zap19. Nevertheless, this compensatory mechanism is not conserved because the lack of the low affinity transporter Zrt2 did not influence the expression of ZRT1 in S. cerevisiae32. These results suggest that C. gattii has evolved redundant mechanisms to obtain zinc from the extracellular space.

Cryptococcal virulence is dependent on the proper regulation of zinc homeostasis. Previously, we showed that inactivation of the transcription factor ZAP1 led to reduced virulence in murine models of cryptococcosis. Null mutants of the ZAP1 gene expressed levels of melanin and capsule comparable to the WT strain, suggesting that disturbed zinc homeostasis does not interfere with the most common virulence factors. Therefore, the lack of proper zinc uptake is the main cause of the reduced virulence of the C. gattii zap1 null mutants9. The abrogation of zinc uptake led to a drastic reduction in virulence in C. gattii, nearly abolishing the mortality rates of mice infected with strains bearing simultaneously inactivated ZIP1 and ZIP2 genes. No differences were found in the virulence of strains containing inactivated individual ZIP1 or ZIP2 genes, suggesting that C. gattii zinc acquisition in the infection milieu relies on the possible functional redundancy of Zip1 and Zip2. The C. albicans ortholog of C. gattii Zip2 (Zrt1p) is involved in virulence, and its null mutants present reduced growth and development in endothelial cells in a zinc-dependent manner34. Similar to S. cerevisiae, C. albicans also possesses four ZIP protein-coding genes. This demonstrates that some fungal ZIP proteins are individually associated with virulence, but this is not the case for C. gattii. A reasonable assumption can be made that C. albicans encodes a specialized zinc acquisition system consisting of the secretion of a zinc chelating protein (zincophore) that delivers zinc into Zrt1p for transport34. Bioinformatic analysis based on the C. gattii genome did not identify an ortholog of the C. albicans zincophore coding gene (data not shown).

Zinc has the ability to preclude the redox activity of transition metals, such as copper and iron35, and an increase in ROS levels has been observed in zinc-deficient cultured mammalian12 and S. cerevisiae cells36. Herein, we demonstrated that the zip1Δ and zip1Δ zip2Δ mutant strains had low intracellular zinc contents. In accordance, the zip1Δ mutant and the zip1Δ zip2Δ double mutant strains displayed higher intracellular ROS levels. One of the major strategies used by phagocytes to inactivate microbes is the production of toxic ROS37. For example, to cope with pathogen invasion, macrophages activate an antifungal response that culminates with the sequestration of exchangeable zinc away from the intracellular pathogens, thereby increasing ROS production38. Indeed, the C. gattii zip1Δ zip2Δ mutant strain was phagocytosed with greater efficiency by macrophages in culture. It is noteworthy that Zip2 alone is important for cryptococcal survival inside macrophages. As iron levels could regulate the expression of this transporter, it is reasonable to infer that it may also participate in iron transport. It is well documented that iron acquisition is a fundamental virulence determinant for C. neoformans39 and that iron depletion is used as an antifungal activity by macrophages40. Therefore, we postulate that the reduced survival of C. gattii lacking ZIP2 could be associated with defects in the acquisition of other metals. However, additional biochemical characterizations of Zip2 are necessary to validate this hypothesis.

In conclusion, this report described the identification and characterization of members of the ZIP family of zinc transporters in C. gattii. Two key events were responsible for the observed reduced virulence of the C. gattii zip1Δ zip2Δ double null mutant in the intranasal murine model of infection: the reduced zinc load in cells and the corresponding increase in intracellular ROS.

Experimental procedures

Ethics statement

The animals were cared for according to the Brazilian National Council for Animal Experimentation Control (CONSEA) and Brazilian College of Animal Experimentation (COBEA) guidelines. Mice were housed in groups of six in filtered top ventilated cages, maintained in a 12 h dark/light cycle and provided with food and water ad libitum. All efforts to minimize animal suffering were made. Before mortality analysis, mice were intraperitoneally anesthetized with 100 mg/kg ketamine and 16 mg/kg xylazine. Mice were analyzed twice daily for any signs of suffering, defined by weight loss, weakness or the inability to eat or drink. Mice were sacrificed following the first signs of suffering. The Universidade Federal do Rio Grande do Sul Ethics Committee for Use of Animals (CEUA - protocol number 19801) approved the use of animals in the present work.

Strains and culture conditions

Fungal strains were routinely cultured in YPD media (2% glucose, 2% peptone and 1% yeast extract) incubated at 37 °C in a constant rotation platform. Agar was added at a final concentration of 1.5% when solid media was used, and hygromycin or G418 was added at a final concentration of 100 μg/ml or 200 μg/ml, respectively, for the selection of transformants. The C. gattii zip1Δ and zip2Δ mutant strains were selected using hygromycin, and the zip1Δ::ZIP1 and zip2Δ::ZIP2 complemented strains and the zip1Δ zip2Δ double mutant strain were selected using G418. The medium used for phenotypic assays was yeast nitrogen base (YNB) without amino acids; asparagine was added at a final concentration of 40 mM. J774.A1 macrophage lineage cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) with 10% heat-inactivated fetal bovine serum (FBS) supplemented with 1 mM l-glutamine, 1 mM sodium pyruvate, and 1% nonessential amino acids (SIGMA) and incubated at 37 °C with 5% CO2.

Bioinformatic analysis

The gene sequences of the four identified ZIP zinc transporters were retrieved from the Broad Institute C. gattii R265 genome database17. Prediction of transmembrane helices was conducted by employing the TMHMM tool41. Phylogenetic analyses were conducted with the ClustalW alignment in Mega 642 by applying the neighbor-joining method; the tree architecture was inferred from 1,000 bootstraps.

Gene knockout and complementation

The sources of the hygromycin and G418 resistance cassettes were plasmids pJAF1543 and pJAF143, respectively. The 5’ and 3’ flanking regions of ZIP1 and ZIP2 were PCR amplified and gel purified using the Illustra GFX PCR DNA and Gel Band Purification kit (GE Healthcare) and the hygromycin resistance cassette. Each fragment was mixed with SmaI-cleaved pUC18 using the In-Fusion® HD EcoDry™ cloning kit following the manufacturer’s protocol. The reactions were transformed in Escherichia coli TG2 cells for blue/white screening selection. For double mutant strain construction, the same protocol was employed with the 5’ and 3’ flanking regions of ZIP2 and the G418 selection marker cloned into the SmaI site of pUC18 after confirmation that the vector was transformed into the zip1Δ mutant strain. For complementation, amplicons encompassing WT ZIP1 or ZIP2 flanked by 1 kb on each side were cloned into the EcoRV site of pJAF1. The resulting plasmids were used for transformation of the zip1Δ and zip2Δ mutant strains. The vectors were transformed into C. gattii by biolistic transformation44, screening was performed using colony PCR, and the deletion was confirmed by southern blot analysis and semi-quantitative RT-PCR. Primers used in these constructions are listed in Table S1.

Zinc deprivation sensitivity test

The zinc sensitivity test was performed following pre-culturing of fungal strains in YPD media overnight at 30 °C. Cells were washed three times with PBS, and the cell density was determined in a Neubauer chamber. A total of 50.000 cells was suspended in 100 μL of YNB (control), YNB supplemented with DTPA (100 μM) in the absence or presence of ZnCl2 (100 μM) or FeCl3 (100 μM) and distributed into 96 well plates. After 48 h of incubation at 30 °C, OD600 was determined in a microplate reader. The relative growth was measured based on WT cell growth in YNB. Statistical analyses were conducted via a two-tailed Student’s t-test or by one-way ANOVA test followed by Tukey multicomparison.

Dithizone assay

The intracellular zinc concentration was estimated using the dithizone assay. Dithizone stock solutions and agar plates were prepared as described elsewhere21. A sterile nitrocellulose membrane was placed on a YNB agar plate in the presence or absence of DTPA (100 μM) or ZnCl2 (400 μM). An aliquot of 5 μl from a standardized cell suspension (OD600 = 1) was spot-inoculated onto the nitrocellulose membrane and incubated for 18 h at 30 °C. After incubation, nitrocellulose membranes containing colonies were transferred onto dithizone agar plates, incubated for 1 h in the dark and photographed.

Real time RT-PCR analyses

RNA was isolated using Trizol (Invitrogen) after cellular lysis with liquid nitrogen using a mortar and pestle. RNA integrity and concentration were assessed by electrophoresis on a 1% agarose gel and by fluorometry analysis using a Qubit fluorometer and the Quant-iT RNA assay kit according to the manufacturer’s instructions (Invitrogen). cDNAs were prepared from DNase (Promega)-treated total RNA samples (200 ng) with ImProm-II Reverse transcriptase (Promega) using oligo-dT. qRT-PCR was performed on a StepOne Real-Time PCR System (Applied Biosystems) with thermal cycling conditions set with an initial step at 95 °C for 10 min, followed by 40 cycles at 95 °C for 15 s, 55 °C for 15 s and 60 °C for 60 s. Platinum SYBR green qPCR Supermix (Invitrogen) was used as a reaction mix and supplemented with 5 pmol of each primer and 1 μl of the cDNA template for a final volume of 20 μl. All experiments were performed using three independent cultures, and each cDNA sample was analyzed in triplicate for each primer pair. A melting curve analysis was performed at the end of the reaction to confirm the presence of a single PCR product. Data were normalized to actin cDNAs amplified in each set of PCR experiments. Relative expression was determined by the 2−ΔCt method45. Statistical analyses were conducted via a two-tailed Student’s t-test or by one-way ANOVA test followed by Tukey multicomparison. The primers used in these analyses are listed in Table S1.

ROS measurements

For ROS measurements, cells were cultured overnight in YNB medium at 30 °C in a constant rotation platform. Cells were washed 3 times using phosphate buffer and counted in a Neubauer chamber. An inoculum of 1 × 107 cells/ml was suspended in YNB medium containing DTPA (100 μM) or DPTA added of ZnCl2 (400 μM). After incubation for 2 hours at 30 °C in a constant rotation platform, 1 ml of the inoculum was collected, and H2DCFDA (Invitrogen) was added to a final concentration of 10 μM. Cells were incubated in the dark for 2 h, washed with PBS and analyzed by fluorometry using a SpectraMax I3 plate reader fluorometer (Molecular Devices) with the emission and excitation wavelengths set at 488 and 520 nm, respectively. Fluorescence values were normalized to cell count, based on the OD600 determination. Statistical analyses were conducted with ANOVA followed by Tukey multicomparison test.

Macrophage assays

Phagocytosis assays were conducted to evaluate the susceptibility of the mutant strains to macrophage phagocytosis activity and the resistance of the strains to the antifungal action of phagocytes. One day before the phagocytosis test, an aliquot of 106 J774.A1 cells in DMEM supplemented with 10% FBS was seeded into 12-well culture plates and activated with 100 U/ml INF-γ (Sigma) and 500 ng/mL LPS (Sigma) for 18 h at 37 °C with 5% CO2. The C. gattii strains were inoculated into YPD and allowed to grow at 30 °C for 18 h. The next day, the C. gattii cells were washed 3 times with PBS and opsonized with anti-GXM antibody 18B7 (final concentration of 1 μg/ml) and incubated for 1 h at 37 °C. After opsonization, Cryptococcus cells were centrifuged, and the pellet was resuspended in 500 μl of a FITC solution (500 μg/ml) and incubated for 10 min at room temperature. The cells were washed several times with PBS and counted in a Neubauer Chamber. A volume of 1 ml of 1 × 107 cells/ml was added to the wells containing macrophage cells and incubated for 2 h at 37 °C with 5% CO2. After the incubation period, the wells were washed 3 times with PBS and treated with Trypan Blue (Sigma) to reduce FITC fluorescence from non-internalized cryptococci. The cells were collected by scraping and analyzed with a Guava easyCyte Flow Cytometer (Merck Millipore) by measuring the green fluorescence of 5000 events46. A second plate under identical conditions was incubated for 24 h to evaluate antifungal activity. After incubation, the wells were washed 3 times with PBS, the cells were lysed with sterile ice-cold water and subsequently plated on YPD plates for CFU determination. The survival index was obtained by normalizing the CFU counts after 24 h of interaction to the fluorescence units obtained in the flow cytometric analysis following 2 h of interaction47. All assays were performed in triplicate for each strain. A Student’s t-test was used to determine the statistical significance of the observed differences in fungal survival.

Survival assays

The survival assay was performed as previously described48. Briefly, the strains were cultured overnight in YPD medium at 30 °C with shaking, then washed three times and re-suspended in PBS. Groups of six female BALB/c mice (4 weeks old) were intraperitoneally anesthetized with 100 mg/kg ketamine and 16 mg/kg xylazine and infected intranasally with 1 × 105 cells in a volume of 50 μl. The mice were monitored twice daily for signals of suffering. The median survival values were calculated using a Kaplan–Meier survival analysis in GraphPad Prism software. Animal studies were approved by the Federal University of Rio Grande do Sul Ethics Committee.

Additional Information

How to cite this article: Schneider, R. O. et al. Effects of zinc transporters on Cryptococcus gattii virulence. Sci. Rep. 5, 10104; doi: 10.1038/srep10104 (2015).

Accession codes: Sequences used for tree construction were derived from S. cerevisiae (SGD accession codes Zrt1p, Zrt2p, Zrt3p and Yke4), A. fumigatus (NCBI accession codes AAT11930.1 – ZrfA; AAT11931.1 – ZrfB; and EDP50333.1 – ZrfC), and Arabidopsis thaliana (NCBI accession code NP_567590.3).

Supplementary Material

Supplementary Information
srep10104-s1.pdf (2MB, pdf)

Acknowledgments

This work was supported by grants from the Brazilian agencies Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES), and Financiadora de Estudos e Projetos (FINEP). We thank Joseph Heitman and Alex Idnurm for providing the pJAF15, pAI4, and pLKB25 plasmids, and Arturo Casadevall for providing monoclonal antibody anti-GXM (18B7).

Footnotes

The authors declare no competing financial interests.

Author Contributions Conceived and designed the experiments: R.O.S., L.K., A.S., M.H.V., and C.C.S. Performed the experiments: R.O.S., C.D., F.M.S., M.I.R.K., A.C.P., A.A.W.G., L.K., and C.C.S. Analyzed the data: R.O.S., C.D., L.K., and C.C.S. Contributed reagents and materials: L.K., A.S., M.H.V., and C.C.S. Wrote the paper: R.O.S. and C.C.S.

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Supplementary Materials

Supplementary Information
srep10104-s1.pdf (2MB, pdf)

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