Table 1.
Affiliation, bioactivity and presence of the PKS-I and NRPS genes of E. deficiens bacterial isolates.
| Isolate | Similaritya | Related straina | Phylum/Class | Genera | Activities in solid assays | Activities in liquid assays | PKS-I | NRPS |
|---|---|---|---|---|---|---|---|---|
| #91_43 | 99.8 | Cellulomonas sp. R-32740; AM403591 | Actinobacteria | Cellulomonas | CA, VA | ND | ND | ND |
| #91_17 | 98.9 | Dermacoccus sp. Ellin185; AF409027 | Actinobacteria | Dermacoccus | CA, VA | N | ND | D |
| #91_34 | 100 | Microbacterium esteraromaticum; 2122; EU714337 | Actinobacteria | Microbacterium | CA | CA | ND | ND |
| #91_42 | 99.9 | Microbacterium foliorum; 150; EU714333 | Actinobacteria | Microbacterium | N | D | ND | |
| #91_19.1 | 99.8 | Microbacterium foliorum; 720; EU714376 | Actinobacteria | Microbacterium | N | ND | D | |
| #91_29 | 99.9 | Microbacterium foliorum; Bjc15-C14; JX464206 | Actinobacteria | Microbacterium | CA | CA | ND | ND |
| #91_36.2 | 99.2 | Microbacterium foliorum; BJC15-C1; JX401513 | Actinobacteria | Microbacterium | CA, VA | CA | ND | ND |
| #91_37 | 100 | Microbacterium foliorum; BJC15-C1; JX401513 | Actinobacteria | Microbacterium | CA, BS, VA | ND | ND | ND |
| #91_40 | 99.4 | Microbacterium foliorum; Bjc15-C14; JX464206 | Actinobacteria | Microbacterium | CA, VA | ND | D | ND |
| #91_41 | 99.4 | Microbacterium foliorum; S2-157; JQ660074 | Actinobacteria | Microbacterium | N | ND | ND | |
| #91_31 | 99.9 | Microbacterium hydrocarbonoxydans; 3084; EU714352 | Actinobacteria | Microbacterium | CA | CA | ND | ND |
| #91_38 | 99.7 | Microbacterium hydrocarbonoxydans; 3517; EU714368 | Actinobacteria | Microbacterium | N | D | ND | |
| #91_45 | 99.7 | Microbacterium hydrocarbonoxydans; 3517; EU714368 | Actinobacteria | Microbacterium | CA | ND | ND | ND |
| #91_47 | 99.7 | Microbacterium hydrocarbonoxydans; HR73; JF700446 | Actinobacteria | Microbacterium | N | ND | ND | |
| #91_35 | 99.8 | Microbacterium phyllosphaerae (T); DSM 13468; P 369/06; AJ277840 | Actinobacteria | Microbacterium | CA, BS, VA | CA | D | ND |
| #91_20 | 97.0 | Rhodococcus hoagii; CUB1156; AJ272469 | Actinobacteria | Rhodococcus | N | ND | ND | |
| #91_36.1 | 100 | Rhodococcus equi; type strain: DSM20307; X80614 | Actinobacteria | Rhodococcus | EC, CA, VA | N | D | D |
| #91_48 | 99.9 | Rhodococcus hoagii; type strain: DSM20307; X80614 | Actinobacteria | Rhodococcus | N | D | ND | |
| #91_54 | 99.9 | Rhodococcus qingshengii; KUDC1814; KC355321 | Actinobacteria | Rhodococcus | CA, VA | CA | ND | D |
| #91_51 | 99.9 | Brevundimonas vesicularis (T); LMG 2350 (T); AJ227780 | Alphaproteobacteria | Brevundimonas | N | ND | D | |
| #91_16 | 99.0 | Paracoccus sphaerophysae strain Zy-3; NR117441 | Alphaproteobacteria | Paracoccus | CA, EC | CA | ND | D |
| #118_42 | 100 | Bacillus amyloliquefaciens; BAC3048; HM355639 | Firmicutes | Bacillus | N | ND | D | |
| #118_43 | 100 | Bacillus amyloliquefaciens; BAC3048; HM355639 | Firmicutes | Bacillus | N | ND | D | |
| #91_46 | 100 | Bacillus aryabhattai; D27; FR750269 | Firmicutes | Bacillus | N | ND | ND | |
| #91_19.2 | 100 | Bacillus flexus; FJ584305 | Firmicutes | Bacillus | N | ND | ND | |
| #91_39 | 100 | Bacillus flexus; FJ584305 | Firmicutes | Bacillus | CA, VA | CA | ND | ND |
| #91_53 | 99.8 | Bacillus sp. CCBAU 10722; EF377323 | Firmicutes | Bacillus | CA, VA | N | ND | ND |
| #91_28 | 99.9 | Bacillus sp. G2DM-19; DQ416802 | Firmicutes | Bacillus | N | ND | ND | |
| #91_8 | 99.7 | Bacillus sp. PEB04; GU213160 | Firmicutes | Bacillus | CA | CA | ND | ND |
| #118_1 | 100 | Enterococcus sp. T004_8; JQ739635 | Firmicutes | Enterococcus | N | ND | D | |
| #118_4 | 99.8 | Enterococcus faecalis; AF039902 | Firmicutes | Enterococcus | VA | CA | ND | D |
| #118_3 | 99.9 | Enterococcus faecalis; GIMC503:NBS-2; JF728295 | Firmicutes | Enterococcus | CA, VA | CA | ND | D |
| #118_19 | 99.9 | Enterococcus faecalis; Y18293 | Firmicutes | Enterococcus | EC, CA, VA | CA | ND | D |
| #118_7 | 100 | Enterococcus faecalis; ZZ18; HM776212 | Firmicutes | Enterococcus | VA | CA | ND | ND |
| #91_5 | 99.8 | Paenibacillus glucanolyticus; KSI 1323; KC113143 | Firmicutes | Paenibacillus | N | ND | D | |
| #91_7 | 99.8 | Paenibacillus sp. JAM-FM32; AB526335 | Firmicutes | Paenibacillus | N | ND | D | |
| #91_24 | 100 | Paenibacillus sp. JAM-FM32; AB526335 | Firmicutes | Paenibacillus | CA, VA | CA | ND | D |
| #118_24 | 98.2 | Citrobacter koseri ATCC BAA-895; CP000822 | Gammaproteobacteria | Citrobacter | N | ND | D | |
| #118_38 | 99.7 | Citrobacter koseri ATCC BAA-895; CP000822 | Gammaproteobacteria | Citrobacter | N | ND | ND | |
| #118_39 | 95.0 | Citrobacter koseri ATCC BAA-895; CP000822 | Gammaproteobacteria | Citrobacter | CA | ND | ND | ND |
| #118_20 | 99.7 | bacterium NLAE-zl-H279; JX006497 | Gammaproteobacteria | Proteus | EC, CA | CA | ND | ND |
| #118_13 | 99.9 | Proteus mirabilis; ATCC 29906T; AF008582 | Gammaproteobacteria | Proteus | CA | EC, CA | ND | D |
| #118_14 | 99.6 | Proteus mirabilis; ATCC 29906T; AF008582 | Gammaproteobacteria | Proteus | EC, CA, VA | ND | ND | — |
| #118_23 | 99.7 | Proteus mirabilis; ATCC 29906T; AF008582 | Gammaproteobacteria | Proteus | CA | ND | ND | ND |
| #118_27 | 100 | Proteus mirabilis; ATCC 29906T; AF008582 | Gammaproteobacteria | Proteus | CA | ND | ND | ND |
| #118_30 | 100 | Proteus mirabilis; ATCC 29906T; AF008582 | Gammaproteobacteria | Proteus | N | ND | ND | |
| #118_34 | 100 | Proteus mirabilis; ATCC 29906T; AF008582 | Gammaproteobacteria | Proteus | N | ND | ND | |
| #118_40 | 99.9 | Proteus mirabilis; ATCC 29906T; AF008582 | Gammaproteobacteria | Proteus | N | ND | ND | |
| #118_5 | 99.7 | Proteus mirabilis; IFS10; AB272366 | Gammaproteobacteria | Proteus | CA | CA | ND | ND |
| #118_25 | 99.8 | Proteus mirabilis; LH-52; JN861767 | Gammaproteobacteria | Proteus | N | ND | ND | |
| #118_33 | 99.3 | Proteus mirabilis; LH-52; JN861767 | Gammaproteobacteria | Proteus | CA | ND | D | ND |
| #66_2 | 97.9 | Bacterium K2-82; AY345483 | Gammaproteobacteria | Pseudoalteromonas | N | D | ND | |
| #91_3 | 99.9 | Bacterium Antarctica-11; EF667985 | Gammaproteobacteria | Pseudoalteromonas | CA, VA | CA | ND | ND |
| #91_9 | 99.9 | Bacterium Antarctica-11; EF667985 | Gammaproteobacteria | Pseudoalteromonas | CA | CA | ND | ND |
| #91_12 | 99.9 | Bacterium Antarctica-11; EF667985 | Gammaproteobacteria | Pseudoalteromonas | CA, VA | CA | D | ND |
| #91_13 | 99.9 | Bacterium Antarctica-11; EF667985 | Gammaproteobacteria | Pseudoalteromonas | EC, CA, VA | CA | ND | ND |
| #91_23 | 99.9 | Bacterium Antarctica-11; EF667985 | Gammaproteobacteria | Pseudoalteromonas | CA | CA | ND | ND |
| #66_11 | 99.3 | Pseudoalteromonas issachenkonii (T); KMM 3549; F13; AF316144 | Gammaproteobacteria | Pseudoalteromonas | CA, VA | EC, CA | D | D |
| #91_22 | 98.6 | Pseudoalteromonas sp. 12; DQ642815 | Gammaproteobacteria | Pseudoalteromonas | CA, VA | CA | ND | ND |
| #66_17 | 100 | Pseudoalteromonas sp. 8007; AM111068 | Gammaproteobacteria | Pseudoalteromonas | EC, CA, VA | CA | D | D |
| #66_6 | 99.8 | Pseudoalteromonas sp.; AR0307; AB019947 | Gammaproteobacteria | Pseudoalteromonas | CA, VA | EC, CA | ND | ND |
| #66_7 | 99.8 | Pseudoalteromonas sp.; AR0307; AB019947 | Gammaproteobacteria | Pseudoalteromonas | CA, VA | CA | ND | ND |
| #66_16 | 99.9 | Pseudoalteromonas sp.; AR0307; AB019947 | Gammaproteobacteria | Pseudoalteromonas | N | D | D | |
| #91_10.1 | 99.9 | Pseudoalteromonas sp.; AR0307; AB019947 | Gammaproteobacteria | Pseudoalteromonas | CA | EC, CA | ND | ND |
| #91_10.2 | 99.9 | Pseudoalteromonas sp.; AR0307; AB019947 | Gammaproteobacteria | Pseudoalteromonas | EC, CA, VA | CA | ND | ND |
| #66_10 | 98.6 | Pseudoalteromonas sp. ARCTIC-P16; AY573035 | Gammaproteobacteria | Pseudoalteromonas | VA | CA | D | D |
| #66_1 | 96.4 | Pseudoalteromonas sp. BSi20325; DQ520886 | Gammaproteobacteria | Pseudoalteromonas | CA | N | ND | ND |
| #66_8 | 99.6 | Pseudoalteromonas sp. BSi20325; DQ520886 | Gammaproteobacteria | Pseudoalteromonas | VA | CA | ND | D |
| #66_18 | 97.9 | Pseudoalteromonas sp. BSi20325; DQ520886 | Gammaproteobacteria | Pseudoalteromonas | N | ND | D | |
| #91_26 | 98.0 | Pseudoalteromonas sp. P1; EF627987 | Gammaproteobacteria | Pseudoalteromonas | EC | CA | ND | ND |
| #66_20 | 98.9 | Pseudoalteromonas sp. SM9913; CP001796 | Gammaproteobacteria | Pseudoalteromonas | CA, VA | EC, CA | D | D |
| #66_13 | 100 | Pseudoalteromonas sp. YASM-1; DQ173038 | Gammaproteobacteria | Pseudoalteromonas | CA, VA | CA | D | D |
| #91_21 | 97.0 | Pseudoalteromonas tetraodonis; Do-17; AB257325 | Gammaproteobacteria | Pseudoalteromonas | CA | CA | ND | ND |
| #66_12 | 98.4 | Pseudoalteromonas tetraodonis; SSA930; KC534452 | Gammaproteobacteria | Pseudoalteromonas | CA, VA | CA | D | D |
| #66_3 | 97.5 | Pseudoalteromonas sp. LOB-15; DQ412067 | Gammaproteobacteria | Pseudoalteromonas | CA, VA | CA | D | ND |
| #91_11 | 95.2 | Uncultured bacterium; 11A-6; FJ998316 | Gammaproteobacteria | Pseudoalteromonas | CA | CA | ND | ND |
| #91_27 | 96.6 | Uncultured Pseudoalteromonas sp.; DVBSW_J357; KF722314 | Gammaproteobacteria | Pseudoalteromonas | CA | EC | ND | ND |
| #66_9 | 98.9 | Uncultured Pseudoalteromonas sp.; CI66; FJ695586 | Gammaproteobacteria | Pseudoalteromonas | CA, VA | EC, CA | ND | D |
| #91_50 | 100 | Pseudomonas oryzihabitans; SFK5; KC335294 | Gammaproteobacteria | Pseudomonas | CA, VA | EC, CA | ND | ND |
| #118_11 | 100 | Psychrobacter celer; B_IV_3L25; JF710994 | Gammaproteobacteria | Psychrobacter | VA | CA | ND | D |
| #118_2 | 99.8 | Psychrobacter celer; 91; JF710993 | Gammaproteobacteria | Psychrobacter | VA | CA | ND | D |
| #118_17 | 99.9 | Psychrobacter celer; 91; JF710993 | Gammaproteobacteria | Psychrobacter | EC, CA, VA | CA | ND | ND |
| #118_18 | 99.9 | Psychrobacter sp. 2CpBB14; JN602232 | Gammaproteobacteria | Psychrobacter | N | ND | D |
CA, Candida albicans; EC, Escherichia coli; VA, Vibrio anguillarum; BS, Bacillus subtilis; N, no activity; D, detected; ND, not detected.
a
Based on SeqMatch (Ribossomal Database Project) (Cole et al., 2014).