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. Author manuscript; available in PMC: 2015 May 7.
Published in final edited form as: J Comput Chem. 2008 Mar;29(4):622–655. doi: 10.1002/jcc.20820

Table 11.

Comparison of Vibrational Analyses for the α-D-Glucopyranose Monomer Using Geometries Computed at the Molecular Mechanics and Quantum Mechanics Levels.

NMODE GLYCAM
B3LYP /6-31++g(2d,2p)//6-31++g(2d,2p)
HF/6-31G*//6-31G*
Frequency cm−1 Frequency cm−1 IR Intensity (kmmol−1) Frequency cm−1 IR Intensity (kmmol−1)
H—O Stretches
3720 3857 39.1 4132 63.8
3714 3851 40.3 4119 56.3
3711 3826 45.9 4099 59
3711 3825 52 4095 95.4
3709 3811 49.4 4089 56.1
H—C Stretches
2980 3063 43.3 3283 78.6
2956 3057 15.7 3270 32.8
2951 3040 19.7 3266 34.3
2947 3031 17 3224 56.9
2947 3012 42.4 3207 58.6
2944 2992 17.9 3195 2.8
2912 2988 58.4 3189 49.8
—C6— Distortions
1635 1458 12.2 1635 0.6
1065 52.3 1206 37.4
421 3.2 463 42.7
Other H—C (Bends, Distortions, Toroidal and Circumferential Motions)
1613 1498 6.9 1667 7
1537 1441 19.1 1620 11
1513 1416 13.3 1593 6
1466 1410 3.8 1583 25.1
1433 1387 1.9 1567 27.5
1393 1382 12.6 1552 47.9
1367 1366 8.1 1536 30.5
1344 1357 4.8 1515 23.2
1315 1351 38.3 1502 17.7
1135 1290 7 1486 26
1130 1281 13.5 1416 6.4
1103 1265 14.7 1402 42.4
1073 1232 20.9 1368 91.3
835 1222 22.1 1300 102.5
1194 25.7 944 24.5
850 12.8
H–O—C Bends
1303 1276 62.3 1437 72.5
1302 1339 51.6
1285 1321 57.5
1274
1236
H–O—C Torsions
458 384 65.1 444 84.8
422 366 58.7 424 51.9
410 360 44.9 419 105.2
382 332 93 386 98.9
313 226 79.7 306 20.1
303 221 50.8 262 123.2
282 171 94 252 55.4
272 207 90.3
231
214
Other Exocyclic (Non-Ring) O Motions
881 1102 72.2 1298 69.2
570 1042 287.4 1274 190.4
521 637 28 696 25.6
481 555 23.7 602 18.3
369 534 18.9 581 51.4
353 436 25.7 486 65.9
298 400 38.5 399 17.2
253 269 13.6 293 2.8
149 251 8.6 274 2.9
107 247 9.9 155 1.8
143 3.9
113 3
Motions of the Ring
1599 1464 12 1258 142.8
1571 1148 53.8 1255 29.1
1545 1129 13.3 1228 25.6
1088 1117 95.9 1215 207.9
1054 1082 71.9 1152 16.6
1028 1075 42.2 1126 32
995 1049 112.1 1099 16.5
983 1012 43 979 20.5
977 995 14.3 851 49.3
661 908 12.2 653 43.7
584 770 38.4
595 22.1
Other Motions of C6 and O6
951 306 14.3 1193 60.8
91 94 6.4 334 9.3
66 65 0.9 123 2.4
106 4.7
75 2.9