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. Author manuscript; available in PMC: 2015 Sep 30.
Published in final edited form as: Nat Commun. 2015 Mar 31;6:6387. doi: 10.1038/ncomms7387

Table 1.

Per-residue MM/GBSA interaction energiesa for interactions of P-selectin with residues in PSGL-1 and GSnP-6

PSGL-1 GSnP-6 PSGL-1 GSnP-6
Y/YC 605b −1.4 ± 0.6 −1.3 ± 0.6 Neu5Ac −2.7 ± 0.8 −2.6 ± 0.8
Y/YC 607b −5.5 ± 0.7 −6.0 ± 0.6 Core-2 Gal −4.2 ± 0.7 −4.2 ± 0.7
Y/YC 610b −0.8 ± 0.4 −0.6 ± 0.3 GlcNAc −3.3 ± 0.6 −3.2 ± 0.5
SO3 605c −1.9 ± 0.8 −2.3 ± 0.9 Fuc −4.8 ± 1.3 −4.7 ± 1.3
SO3 607c −2.9 ± 0.9 −3.5 ± 0.8 GalNAc −0.6 ± 0.3 −0.4 ± 0.2
SO3 610c −0.8 ± 0.6 −0.8 ± 0.4 Gal 0.1 ± 0.1 0.1 ± 0.1


Subtotal −13.3 ± 1.7 −14.1 ± 1.5 Subtotal −15.5 ± 1.8 −15.0 ± 1.8
Amino Acids

K603e N/A 1.3 ± 0.1 L613 −4.1 ± 1.1 −3.4 ± 1.2
E604 0.1 ± 0.2 −0.6 ± 0.1 P614 −1.9 ± 1.2 −1.3 ± 1.0
E606 −1.2 ± 0.4 −1.2 ± 0.3 E615 −0.9 ± 0.2 −0.9 ± 0.2
L608 −2.2 ± 1.2 −3.3 ± 0.8 T616d −1.4 ± 0.3 −1.3 ± 0.4
D609 −1.8 ± 0.7 −1.9 ± 0.7 E617 −0.6 ± 0.3 −0.5 ± 0.3
D611 −0.7 ± 0.1 −0.7 ± 0.1 P618 −0.4 ± 0.1 −0.4 ± 0.2
F612 −1.2 ± 0.6 −0.9 ± 0.5

Subtotal −16.3 ± 2.3 −15.1 ± 2.1

Total Interaction Energy −45.1 ± 3.4 −44.6 ± 3.1
a

All results are in kcal/mol. The entropy contributions are not included in these results.

b

Contribution from tyrosine sulfate or tyrosine sulfonate not including the SO3 group.

c

SO3 is counted as a residue in the energy decomposition, instead of –O-SO3 or –CH2SO3.

d

Glycosylation site.

e

Numbering based on the crystal structure.