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. Author manuscript; available in PMC: 2015 May 7.
Published in final edited form as: Pac Symp Biocomput. 2010:228–239. doi: 10.1142/9789814295291_0025

Figure 6.

Figure 6

Mean First Passage Times (MFPTs) between the eight most populated states in the L3 MSM with a lag time of 20ns (L3 MSM is generated from a super level set with three levels, see Table 1 for details). All the MFPTs are in units of microseconds. States are labeled in red from 1 to 8 according to their populations in descending order. The populations of each state are shown in black. Two representative conformations are shown from each state using Pymol[42] with a cartoon representation. These conformations were extracted by selecting the centers of the top populated microstates in each macrostate.