Table 1. Measurements of mRNA (above the midline) and protein (below the midline) analyzed using structured covariance modeling.
| Study identifier [reference] | Technology (replicates) | % missing |
|---|---|---|
| causton[76] | Commercial microarray (5) | 19–22 |
| dudley[77] | Custom microarray (4) | 5 |
| garcia[78] | Custom microarray (1a) | 1 |
| holstege[36] | Commercial microarray (1) | 12 |
| ingolia[18, 79] | RNA-Seq (6) | 4–10 |
| lipson[38] | RNA-Seq (6) | 1 |
| lipson.MA [38] | Commercial microarray (1) | 4 |
| mackay[80] | Custom microarray (1) | 28 |
| miura[54] | Competitive PCR (4) | 26–29 |
| nagalakshmi[37] | RNA-Seq (1) | 22 |
| pelechano[81] | Custom microarray (1) | 14 |
| roth[82] | Commercial microarray (2) | 59–70 |
| velculescu[35] | SAGE (1) | 58 |
| yassour[43] | RNA-Seq (4) | 5 |
| futcher[20] | 2D gel (1) | 99 |
| ghaemmaghami[30] | Western blot (1) | 34 |
| degodoy[40] | LC MS/MS (1) | 25 |
| gygi[6] | 2D gel (1) | 98 |
| lee[41] | LC MS/MS (3) | 67–76 |
| lu[17] | LC MS/MS (1) | 83 |
| nagaraj[83] | LC MS/MS (6) | 31 |
| newman[39] | GFP/flow cytometry (1) | 60 |
| peng[75] | LC MS/MS (1) | 74 |
| thakur[84] | LC MS/MS (3) | 84–85 |
| washburn[85] | LC MS/MS (1) | 77 |
aAverage of three replicates.