Table 1.

Primers used for PCR followed by amplicon sequencing and primers used for RT-PCR.

Target	Forward primer (5′→3′)	Reverse primer (5′→3′)	Source
Primers used for PCR followed by amplicon sequencing
ctsR	GCAGGGATAAACGCTGAAAG	ACTCCGGACATCCAACTC	Van Boeijen et al. (2008)
rpsU	CGCGTAGTCCTCCACAATGA	GCCAGAGAAGGCGAGGATAG	This study
rpsU_14	ACGATTTCATGTTGACGATGC	CGGTCCATTAGCCTTGTTGT	This study
Primers used for RT–PCR
16S	GATGCATAGCCGACCTGAGA	TGCTCCGTCAGACTTTCGTC	Van Boeijen et al. (2010)
tpi	AACACGGCATGACACCAATC	CACGGATTTGACCACGTACC	Van der Veen et al. (2010)
ctsR	GATTAATGGTTGCGGCATTG	CAAAGCAACTAACATCGCTCT	Van Boeijen et al. (2010)
clpC	AGTCGATGTTTGGCGATGAG	TGGAGGAGCCCCAACTAAAC	Van Boeijen et al. (2010)
sigB	GAAGCAATGGAAATGGGAAA	CATCATCCGTACCACCAACA	This study
gadD2	AATACCTTGCCCATGCAGTC	GGCTTGGAAATCTTGGATGA	Karatzas et al. (2010)
gadT2	CACGGCTAAAATCGCAAAAT	GGAAGCTTCAACAAAAATGT	Karatzas et al. (2010)
rpsU	CGTTTAAAGCGACGAAGAGCA	CGGAGGGAGGGAAAGAGAGA	This study