Table 1.
Microorganisms chosen for the comparative metabolomics study. Organisms included in Query 2 had de novo Enzyme Commission (EC) number annotations.
| Query | “Healthy” Microbiome | “Autism” Microbiome |
|---|---|---|
| Included in Query 1 | Bacteroides fragilis | Desulfovibrio desulfuricans |
| Bifidobacterium longum | Clostridium perfringens | |
| Ruminococcus bromii | Clostridium difficile | |
| Roseburia intestinalis | Akkermansia muciniphila | |
| Faecalibacterium prausnitzii | ||
| Eubacterium rectale | ||
| Alistipes putredinis | ||
| Alistipes shahii | ||
| Weissella koreensis | ||
| Prevotella ruminicola | ||
| Odoribacter splanchnicus | ||
| Methanobrevibacter smithii | ||
| Clostridium leptum | ||
| Lactobacillus acidophilus | ||
| Additional organisms included in Query 2 | Bacteroides thetaiotaomicron | Sutterella wadsworthensis |
| Bacteroides caccae | Clostridium bolteae | |
| Bacteroides vulgatus | ||
| Desired, but not included | Bacteroides finegoldii | Desulfovibrio piger |
| Bacteroides ovatus | Desulfovibrio intestinalis | |
| Bacteroides uniformis | Clostridium butyricum | |
| Bifidobacterium adolescentis | Clostridium paraputrificum | |
| Bifidobacterium pseudolongum | Clostridium subterminale | |
| Eubacterium siraeum | Clostridium tertium | |
| Dorea | Clostridium bifermentans | |
| Veillonella | Clostridium glycolicum | |
| Turicibacter | Bacteroides stercoris | |
| Barnesiella intestinihominis | Parabacteroides distasonis | |
| Odoribacter laneus | Parabacteroides merdae | |
| Dialister invisus | Paraprevotella xylaniphila | |
| Eubacterium eligens | ||
| Prevotella oulorum |